View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_2D_high_22 (Length: 209)
Name: NF9115_2D_high_22
Description: NF9115_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_2D_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 1178050 - 1177878
Alignment:
| Q |
21 |
acagaaaccatacagggaatcatcatacttagagtgacagaatgagggtgcagggggtataaggtggacctgtttagttgttgggttccatagaatcaag |
120 |
Q |
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| T |
1178050 |
acagaaaccatacagggaatcatcatacttagagtgacagaatgagggtgcagggggtataaggtggacctgtttagttgttgggttccatagaatcaag |
1177951 |
T |
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| Q |
121 |
tgaccaagagttgaattcctataaaaagcttttaagaagaaaacaccattgcaattgccatatgtttcgattc |
193 |
Q |
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| T |
1177950 |
tgaccaagagttgaattcctataaaaagcttttaagaagaaaacaccattgcaattgccatatgtttcaattc |
1177878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 6840834 - 6840996
Alignment:
| Q |
25 |
aaaccatacagggaatcatcatacttagagtgacagaatgagggtgcagg-gggtataaggtggacctgtttagttgttgggttccatagaatcaagtga |
123 |
Q |
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| T |
6840834 |
aaaccatacaaggaatcatcatatttaga-tcagagaatgagggtgcaggaggggatacggtgaacttgtttaactgttgggttccatagaatcaagtga |
6840932 |
T |
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| Q |
124 |
ccaaga---gttgaattcctataaaaagcttttaagaagaaaacaccattgcaattgccatatg |
184 |
Q |
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| T |
6840933 |
ccaagatttgttgaatgccaataaaaagcttttaaaaagaaaacaccattgcaattgccatatg |
6840996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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