View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9115_2D_high_3 (Length: 661)

Name: NF9115_2D_high_3
Description: NF9115_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9115_2D_high_3
NF9115_2D_high_3
[»] chr1 (1 HSPs)
chr1 (1-640)||(26218441-26219076)


Alignment Details
Target: chr1 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 1 - 640
Target Start/End: Complemental strand, 26219076 - 26218441
Alignment:
Q  1 cagtctggtagctcggtcccatttcacctgagcaagttcaatgatgttgcaccaaactttaatgtttcgtttttaccaaatgctccacatcagaatcatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26219076 cagtctggtagctcggtcccatttcacctgagcaagttcaatgatgttgcaccaaactttaatgtttcgtttttaccaaatgctccacatcagaatcatg 26218977  T
Q  101 aaagttgcgggttgtaagccattagaagcctgtatgatagatgctataatatttgggaggtttgtatgttgctgttgatgaagttggatgatatcccaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26218976 aaagttgcgggttgtaagccattagaagcctgtatgatagatgctataatatttgggaggtttgtatgttgctgttgatgaagttggatgatatcccaac 26218877  T
Q  201 actcaaaagccttcaaacttgttctgcattgtcgcaccaaaagaaaagatgaagataattatcttcaatctcgcccgcacatagaacacaattgtttgta 300  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  26218876 actcaaaagacttcaaacttgttctgcattgtcgcaccataagaaaagatgaag---attatcttcaatctcgcccgcacatagaacacaattgtttgta 26218780  T
Q  301 taagatactcattttttgatttagatgaaatcgagtggggatgcaatttctgcacaaacgccacacaattttattaacttcgggtggta--tttttctcg 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  26218779 taagatactcattttttgatttagatgaaatcgagtggggatgcaatttctgcacaaacgccacacaattttattaacttcgggtggtatttttttctcg 26218680  T
Q  399 ccaaatgaattgccaactcccggagtctggatgttcgagctactagcacccatacaaatacaggaacgatatgtgtttttaacaaagaaatttccatgct 498  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||    
T  26218679 ccaaatgaattgccaactcccggagtttggatgttcgagctaccagcacccatacaaatacaggaatgatatgtgtttttaacaaagaaatttccatcct 26218580  T
Q  499 tttcgagcatccatatcaacttgtcctctgtggctttagttgcttaagattatattcgctttaagtaggaagatgtagagtggatccatctgcaatccat 598  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26218579 tttcgagcatccgtatcaacttgtcctctgtggctttagttgcttaagattatactcgctttaagtaggaagatgtagagtggatccatctgcaatccat 26218480  T
Q  599 ttagttccctgtaccaatatgcatgttgtgcctacgctccac 640  Q
    |||||||||||||||||||||||   ||||||||||||||||    
T  26218479 ttagttccctgtaccaatatgca---tgtgcctacgctccac 26218441  T

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