View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_2D_high_5 (Length: 503)
Name: NF9115_2D_high_5
Description: NF9115_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_2D_high_5 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 16 - 149
Target Start/End: Original strand, 15965076 - 15965206
Alignment:
| Q |
16 |
tgtttatgatgtacgatatatgtgttttcttctaggtgtttcgactatgtacgacaccttttgatatgtagtttctgtgttgctggtctctatttttctt |
115 |
Q |
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| T |
15965076 |
tgtttatgatgtacgatatatgtgttttcttctaggtgtttcgactatgtacga-accttttgatatgtagtttccgtgttgtcggtctcttattttctt |
15965174 |
T |
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| Q |
116 |
ggtagagactcagatattaataaattttgttgtt |
149 |
Q |
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| T |
15965175 |
gg--cagacccagatattaataaattttgttgtt |
15965206 |
T |
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Target: scaffold0025 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 413 - 458
Target Start/End: Original strand, 56373 - 56418
Alignment:
| Q |
413 |
ttgatgattgaaggatgaatgaaacaaagatgattgaaaggaaaaa |
458 |
Q |
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| T |
56373 |
ttgatgattgaaggatgaatgaaacaaagatgattgaaaggaaaaa |
56418 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 401 - 446
Target Start/End: Complemental strand, 52980447 - 52980402
Alignment:
| Q |
401 |
gaacaatggatcttgatgattgaaggatgaatgaaacaaagatgat |
446 |
Q |
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| T |
52980447 |
gaacaatgggtcttgataattgaaggatgaatgaaacaaagatgat |
52980402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 401 - 446
Target Start/End: Original strand, 39591941 - 39591986
Alignment:
| Q |
401 |
gaacaatggatcttgatgattgaaggatgaatgaaacaaagatgat |
446 |
Q |
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| T |
39591941 |
gaacaatgagtcttgataattgaaggatgaatgaaacaaagatgat |
39591986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 441
Target Start/End: Original strand, 33799093 - 33799133
Alignment:
| Q |
401 |
gaacaatggatcttgatgattgaaggatgaatgaaacaaag |
441 |
Q |
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| T |
33799093 |
gaacaatggatcttgatgattgaaggatgaatgcaacaaag |
33799133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 40796754 - 40796794
Alignment:
| Q |
12 |
ttggtgtttatgatgtacgatatatgtgttttcttctaggt |
52 |
Q |
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| T |
40796754 |
ttggtgtttatgatgtacgatgtatgtattttcttttaggt |
40796794 |
T |
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