View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_2D_high_7 (Length: 435)
Name: NF9115_2D_high_7
Description: NF9115_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_2D_high_7 |
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| [»] scaffold0655 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 38458079 - 38457656
Alignment:
| Q |
1 |
ctttggctacgacttttttctttaaatttcccatctctttgtgtgttatgtagctcactggtgttagtattaatggtctgcatattgaataattagaaat |
100 |
Q |
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| T |
38458079 |
ctttggctacgacttttttctttaaatttctcatctctttgtgtgttatgtagctcactggtgttagtattaatggtctgcatattgaataattagaaat |
38457980 |
T |
|
| Q |
101 |
agatcaggttgccttccacaattagatggaaattgtggatgtggattgtgaaataatgtcttgctattaaaatacgtggtttaggtgcattaatgtctct |
200 |
Q |
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| T |
38457979 |
agatcaggttgccttccacaattagatggaaattgtggatgtggattgtgaaataatgtcttgctattaaaatatgtggtttaggtgcattaatgtctct |
38457880 |
T |
|
| Q |
201 |
tattatggcccctgatcctagtttctatttgtagttttggtgcactatagtctaatgtcttgtaactttactgcaatatttttgctagtgattgttggct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38457879 |
tattatggcccctgatcctagtttctatttgtagttttggtgcactatagtctaatgtcttgtaactttactgcaatatttttgctagtgattgttggct |
38457780 |
T |
|
| Q |
301 |
ctttttcaggttttttgcaacaggtttcctttgttgaggcattcagttaaccggcggtaggtcgcattactggaaatgaaagtttttcatggatgttgct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38457779 |
ctttttcaggttttttgcaacaggtttcctttgttgaggcattcagttaaccggcggtaggtcgcattactggaaatggaagtttttcatggatgttgct |
38457680 |
T |
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| Q |
401 |
gcctctggttttttgcacaggttc |
424 |
Q |
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| T |
38457679 |
gcctctggttttttgcactggttc |
38457656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0655 (Bit Score: 136; Significance: 8e-71; HSPs: 1)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 22 - 283
Target Start/End: Complemental strand, 2659 - 2388
Alignment:
| Q |
22 |
ttaaatttcccatctctttgtgtgttatgtagctc--actggtgttagtattaatggtctgcatattgaataattagaaatagatcaggttgccttcc-- |
117 |
Q |
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|||||||||| |||||||| | ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2659 |
ttaaatttcctatctctttctatgttatgtagctctcactggtgttagtattaattgtctgcatattgaataattagaaatagataaggttgccttccca |
2560 |
T |
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| Q |
118 |
acaatt--agatggaaattgtggatgtggattgtgaaataatgtcttgctattaaaatacgtggtttaggtgcattaatgtctcttattatggcccctga |
215 |
Q |
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| | || |||||||||||||| |||||| |||| |||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||| |
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| T |
2559 |
atagtttgagatggaaattgtgaatgtgggttgtaaaataatgtcttgctattaaaatatgtgctttaggtgcattaatgtctctttttatggcccctga |
2460 |
T |
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| Q |
216 |
tcctagtttctatttgtagttttggtgcactatagt-----ctaatgtcttgtaactttactgcaatattttt |
283 |
Q |
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| T |
2459 |
ttctagtttct-gtcgtagttttggtgcactataataacacataatgtcttgtaactttactgtaatattttt |
2388 |
T |
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