View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9115_2D_high_8 (Length: 422)

Name: NF9115_2D_high_8
Description: NF9115_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9115_2D_high_8
NF9115_2D_high_8
[»] chr8 (3 HSPs)
chr8 (14-403)||(7007632-7008009)
chr8 (60-106)||(43806199-43806245)
chr8 (59-95)||(29096955-29096991)
[»] chr3 (3 HSPs)
chr3 (298-381)||(1237828-1237911)
chr3 (70-106)||(28525028-28525064)
chr3 (59-95)||(49636840-49636876)
[»] chr4 (1 HSPs)
chr4 (59-94)||(39765541-39765576)
[»] chr2 (2 HSPs)
chr2 (60-95)||(35198245-35198280)
chr2 (59-95)||(39459793-39459829)
[»] chr6 (3 HSPs)
chr6 (59-101)||(34625743-34625785)
chr6 (70-99)||(24974993-24975022)
chr6 (70-98)||(11539363-11539391)
[»] chr5 (2 HSPs)
chr5 (59-108)||(9878033-9878082)
chr5 (69-101)||(12969538-12969570)
[»] chr7 (1 HSPs)
chr7 (70-98)||(21174774-21174802)
[»] chr1 (1 HSPs)
chr1 (59-95)||(26462659-26462695)


Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 14 - 403
Target Start/End: Complemental strand, 7008009 - 7007632
Alignment:
Q  14 acagagaaatggataccgtacacgttacttgcacgtcgaaacaacaataattaaagaaaatgaattaattgaatgtaatcacgtatgtcagtgcccaata 113  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7008009 acagagacatggataccgtacacgttacttgcacgtcgaaacaacaataattaaagaaaatgaattaattgaatgtaatcacgtatgtcagtgcccaata 7007910  T
Q  114 ccgacacatgttagacacttgtaacgccttcgatcataagtgtcagtgctacataatatgtatgcatcaaagtagtacataactatacacataacctcga 213  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||| |    
T  7007909 ccgacacatgttagacacttgtaaagccttcgatcataagtgtcagtgctacataatatgtatgcatcaaagtagtacataac------------ctcaa 7007822  T
Q  214 cttatctgctaaaatcctaggagcacaataagcatgaagaaattttcaaagttgagctacagacaaagaaaacacaacatgctatgcaaaacaaacctga 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7007821 cttatctgctaaaatcctaggagcacaataagcatgaagaaattttcaaagttgagctacagacaaagaaaacacaacatgctatgcaaaacaaacctga 7007722  T
Q  314 attctcaaagccacgccctgaagttgcgatttaagcttgtaaaacttttcaatctgatggcgagttctgataagatccttggccataacc 403  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7007721 attctcaaagccacaccctgaagttgcgatttaagcttgtaaaacttttcaatctgatggcgagttctgataagatccttggccataacc 7007632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 43806245 - 43806199
Alignment:
Q  60 ataattaaagaaaatgaattaattgaatgtaatcacgtatgtcagtg 106  Q
    |||||| ||||||||||||||||||||| ||||||| ||||| ||||    
T  43806245 ataatttaagaaaatgaattaattgaatataatcacatatgttagtg 43806199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 29096955 - 29096991
Alignment:
Q  59 aataattaaagaaaatgaattaattgaatgtaatcac 95  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  29096955 aataatttaagaaaataaattaattgaatgtaatcac 29096991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 381
Target Start/End: Original strand, 1237828 - 1237911
Alignment:
Q  298 tgcaaaacaaacctgaattctcaaagccacgccctgaagttgcgatttaagcttgtaaaacttttcaatctgatggcgagttct 381  Q
    |||||||||||| |||||||||||||| || ||||||| ||| ||||||||| | ||||||| ||| || |||||| |||||||    
T  1237828 tgcaaaacaaacatgaattctcaaagcaactccctgaaattgtgatttaagcctataaaactattccatatgatggtgagttct 1237911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 28525028 - 28525064
Alignment:
Q  70 aaaatgaattaattgaatgtaatcacgtatgtcagtg 106  Q
    |||||||||||||||||||||||||| | ||||||||    
T  28525028 aaaatgaattaattgaatgtaatcacatgtgtcagtg 28525064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 49636876 - 49636840
Alignment:
Q  59 aataattaaagaaaatgaattaattgaatgtaatcac 95  Q
    |||||||  ||||||||||||||||||||||||||||    
T  49636876 aataatttgagaaaatgaattaattgaatgtaatcac 49636840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 94
Target Start/End: Original strand, 39765541 - 39765576
Alignment:
Q  59 aataattaaagaaaatgaattaattgaatgtaatca 94  Q
    |||||||||| |||||||||||||||||||||||||    
T  39765541 aataattaaaaaaaatgaattaattgaatgtaatca 39765576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 35198280 - 35198245
Alignment:
Q  60 ataattaaagaaaatgaattaattgaatgtaatcac 95  Q
    |||||| |||||||||||||||||||||||||||||    
T  35198280 ataatttaagaaaatgaattaattgaatgtaatcac 35198245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 39459793 - 39459829
Alignment:
Q  59 aataattaaagaaaatgaattaattgaatgtaatcac 95  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  39459793 aataatttaaggaaatgaattaattgaatgtaatcac 39459829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 101
Target Start/End: Original strand, 34625743 - 34625785
Alignment:
Q  59 aataattaaagaaaatgaattaattgaatgtaatcacgtatgt 101  Q
    |||||||  |||||||||||||||||||||||||||| |||||    
T  34625743 aataatttgagaaaatgaattaattgaatgtaatcacatatgt 34625785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 99
Target Start/End: Original strand, 24974993 - 24975022
Alignment:
Q  70 aaaatgaattaattgaatgtaatcacgtat 99  Q
    ||||||||||||||||||||||||||||||    
T  24974993 aaaatgaattaattgaatgtaatcacgtat 24975022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 11539363 - 11539391
Alignment:
Q  70 aaaatgaattaattgaatgtaatcacgta 98  Q
    |||||||||||||||||||||||||||||    
T  11539363 aaaatgaattaattgaatgtaatcacgta 11539391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 9878082 - 9878033
Alignment:
Q  59 aataattaaagaaaatgaattaattgaatgtaatcacgtatgtcagtgcc 108  Q
    |||||||  |||| ||||||||||||||||||||||| | ||||||||||    
T  9878082 aataatttgagaatatgaattaattgaatgtaatcacttgtgtcagtgcc 9878033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 12969538 - 12969570
Alignment:
Q  69 gaaaatgaattaattgaatgtaatcacgtatgt 101  Q
    ||||||||||||||||||||||||||| |||||    
T  12969538 gaaaatgaattaattgaatgtaatcacatatgt 12969570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 98
Target Start/End: Complemental strand, 21174802 - 21174774
Alignment:
Q  70 aaaatgaattaattgaatgtaatcacgta 98  Q
    |||||||||||||||||||||||||||||    
T  21174802 aaaatgaattaattgaatgtaatcacgta 21174774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 26462695 - 26462659
Alignment:
Q  59 aataattaaagaaaatgaattaattgaatgtaatcac 95  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  26462695 aataatttaagaaaatgaaataattgaatgtaatcac 26462659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University