View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_2D_low_12 (Length: 459)
Name: NF9115_2D_low_12
Description: NF9115_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_2D_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 31413532 - 31413177
Alignment:
| Q |
1 |
catagaggcgtgtgatagtgcattgtttcaataaccatattaaatgaaagcgcataagcccttaatgatgggtctcaataatataaatgattttagattt |
100 |
Q |
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| T |
31413532 |
catagaggcgtgtgaaggtgcattgtttcaataaccatattaaatgaaagcgcataagcccttaacgctgggtctcaataatataaatgattttagattt |
31413433 |
T |
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| Q |
101 |
gtgtaaattacataaataatcata-------------------cttatttctaatctttgttaacactgcaactaatccttcaaaaccctaaatctggat |
181 |
Q |
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| T |
31413432 |
gtgtaaattacataaataatcatatcatatcatcatactcatacttatttctaatctttgttaacactgcaactaatcctccaaaaccctaaatttggat |
31413333 |
T |
|
| Q |
182 |
ttttagacgccaaaatattatggccgttagatcaatctatttgggcgcctggaacatatcagccattgattgctttttaacgcttgattacacacacatc |
281 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31413332 |
ttttaggcgccaaaatattgtggccgttagatcaatctatttgggtgcctggaacatatcagccattgattgctttttaacgcttgattacacacacatc |
31413233 |
T |
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| Q |
282 |
aatgctagatgttaatgctgggttaattgcatttactcttatttgacttacacggt |
337 |
Q |
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| T |
31413232 |
aatgctagatgttaatgctgggttaattgcatttactcttatttgacttgcacggt |
31413177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 444
Target Start/End: Original strand, 31412861 - 31412899
Alignment:
| Q |
406 |
caaactatgcaaacatttctctgttataggctttaaact |
444 |
Q |
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| T |
31412861 |
caaactatgcaaacatttctctgttataggcttcaaact |
31412899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 8e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 169 - 337
Target Start/End: Original strand, 38014390 - 38014556
Alignment:
| Q |
169 |
cctaaatctggatttttagacgccaaaatattatggccgttagatcaatctatttgggcgcctggaacatatcagccattgattgctttttaacgcttga |
268 |
Q |
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|||||| || ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38014390 |
cctaaacctagatttttaggcgccaaactattatggccgttagatcaatctatttgggcgcctggaacatatcagccattgattgctttttaacgcttga |
38014489 |
T |
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| Q |
269 |
ttacacacacatcaatgctagatgttaatgctgggttaattgcatttactcttatttgacttacacggt |
337 |
Q |
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| T |
38014490 |
tt--acacacatcaatgctagatgttaatgctgggttgattgcatttattgttatttgacttgcacggt |
38014556 |
T |
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