View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9115_2D_low_15 (Length: 429)

Name: NF9115_2D_low_15
Description: NF9115_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9115_2D_low_15
NF9115_2D_low_15
[»] chr6 (11 HSPs)
chr6 (175-410)||(7382512-7382747)
chr6 (1-93)||(7382760-7382852)
chr6 (1-101)||(7381610-7381710)
chr6 (10-75)||(7382562-7382627)
chr6 (238-363)||(7382775-7382900)
chr6 (198-315)||(7381849-7381968)
chr6 (238-330)||(7381026-7381118)
chr6 (117-185)||(7381319-7381387)
chr6 (240-327)||(7382147-7382234)
chr6 (254-376)||(7381620-7381742)
chr6 (44-77)||(7381787-7381820)
[»] chr3 (1 HSPs)
chr3 (137-165)||(19174918-19174946)


Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 175 - 410
Target Start/End: Complemental strand, 7382747 - 7382512
Alignment:
Q  175 tgtaatcacatatatcgatgtcgcaccttcattcaaaagtgttggtgcttcgagggctccgacaaaaattggatctttgtttgtgtggtttagtctattt 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7382747 tgtaatcacatatatcgatgtcgcaccttcattcaaaagtgttggtgcttcgagggctccgacaaaaattggatctttgtttgtgtggtttagtctattt 7382648  T
Q  275 cttgagcaattcacttgtcattgaagtttgttattgtgaattaaaatttgggtcttgtttggttaaggaaatagattaatggctttatattgtttttggt 374  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7382647 cttgagcaattcacttgccattgaggtttgttattgtgaattaaaatttgggtcttgtttggttaaggaaatagattaatgggtttatattgtttttggt 7382548  T
Q  375 tggctctaagaaaaattgcatctttgtttgtgtgat 410  Q
    ||||||||||||||||||||||||||||||||||||    
T  7382547 tggctctaagaaaaattgcatctttgtttgtgtgat 7382512  T

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Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 7382852 - 7382760
Alignment:
Q  1 ctcttgctgttgaggtttgttattgttaatcaaaatttgggtcttgtttggataaggaaatagaataatgggtttgtaataattttggttgaa 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  7382852 ctcttgctgttgaggtttgttattgttaatcaaaatttgggtcttgtttggataaggaaatagaataatgggtttataataaatttggttgaa 7382760  T

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Target: chr6; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 7381710 - 7381610
Alignment:
Q  1 ctcttgctgttgaggtttgttattgttaatcaaaatttgggtcttgtttggataaggaaatagaataatgggtttgtaataattttggttgaagattggt 100  Q
    |||||||| |||||||||||| | ||||||||||||||| ||||||||||| ||||||| ||||| |||||||||||| || ||||||||||| ||||||    
T  7381710 ctcttgctattgaggtttgttttagttaatcaaaatttgtgtcttgtttggttaaggaagtagaaaaatgggtttgtattagttttggttgaaaattggt 7381611  T
Q  101 t 101  Q
    |    
T  7381610 t 7381610  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 7382627 - 7382562
Alignment:
Q  10 ttgaggtttgttattgttaatcaaaatttgggtcttgtttggataaggaaatagaataatgggttt 75  Q
    ||||||||||||||||| ||| |||||||||||||||||||| |||||||||||| ||||||||||    
T  7382627 ttgaggtttgttattgtgaattaaaatttgggtcttgtttggttaaggaaatagattaatgggttt 7382562  T

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Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 238 - 363
Target Start/End: Complemental strand, 7382900 - 7382775
Alignment:
Q  238 aaaaattggatctttgtttgtgtggtttagtctatttcttgagcaattcacttgtcattgaagtttgttattgtgaattaaaatttgggtcttgtttggt 337  Q
    ||||||||||| ||| |||||||||||| || || ||  || | ||||| ||||   |||| |||||||||||| ||| ||||||||||||||||||||     
T  7382900 aaaaattggatttttatttgtgtggtttggtttactttctgtgtaattctcttgctgttgaggtttgttattgttaatcaaaatttgggtcttgtttgga 7382801  T
Q  338 taaggaaatagattaatggctttata 363  Q
    |||||||||||| |||||| ||||||    
T  7382800 taaggaaatagaataatgggtttata 7382775  T

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Target: chr6; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 198 - 315
Target Start/End: Complemental strand, 7381968 - 7381849
Alignment:
Q  198 caccttcattcaaaagtgttggtgcttcgagggctccgacaaaaattggatctttgtttgtgtggtttagtctatttcttgagcaat--tcacttgtcat 295  Q
    ||||||||||||||||| | |||||| | | |||||| |||||||||||||||||||||||||||||| || ||  | |||||||||  || || | |||    
T  7381968 caccttcattcaaaagtttcggtgctacaaaggctccaacaaaaattggatctttgtttgtgtggtttggtatacattttgagcaattctccctcgccat 7381869  T
Q  296 tgaagtttgttattgtgaat 315  Q
    ||| ||||||||||||||||    
T  7381868 tgaggtttgttattgtgaat 7381849  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 238 - 330
Target Start/End: Complemental strand, 7381118 - 7381026
Alignment:
Q  238 aaaaattggatctttgtttgtgtggtttagtctatttcttgagcaattcacttgtcattgaagtttgttattgtgaattaaaatttgggtctt 330  Q
    ||||||||||| ||| |||||||||||| |||||||||||||||||||| | ||  ||| | ||||||||  |||||| |||||||| |||||    
T  7381118 aaaaattggatttttatttgtgtggtttggtctatttcttgagcaattctcatgctattcaggtttgttacagtgaatcaaaatttgagtctt 7381026  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 7381387 - 7381319
Alignment:
Q  117 gacactgacactaacttgttgatattggtgataatttgagaaaataaatgcaatcgaatgtaatcacat 185  Q
    |||||||||||||||  |||||||  |||||||||||||||||||  ||| ||||||||||||||||||    
T  7381387 gacactgacactaacacgttgatacaggtgataatttgagaaaatggatgtaatcgaatgtaatcacat 7381319  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 327
Target Start/End: Complemental strand, 7382234 - 7382147
Alignment:
Q  240 aaattggatctttgtttgtgtggtttagtctatttcttgagcaattcacttgtcattgaagtttgttattgtgaattaaaatttgggt 327  Q
    ||||||||| |||||||||||||||  ||||||||||||||||||||  ||| ||   | ||||||||||  |||||||| |||||||    
T  7382234 aaattggatttttgtttgtgtggttcggtctatttcttgagcaattctattgccacataggtttgttattaagaattaaattttgggt 7382147  T

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Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 376
Target Start/End: Complemental strand, 7381742 - 7381620
Alignment:
Q  254 tttgtgtggtttagtctatttcttgagcaattcacttgtcattgaagtttgttattgtgaattaaaatttgggtcttgtttggttaaggaaatagattaa 353  Q
    |||||||||||| ||||  || ||| |||| || ||||  ||||| ||||||| | || ||| |||||||| ||||||||||||||||||| ||||  ||    
T  7381742 tttgtgtggtttggtctgctttttgtgcaaatctcttgctattgaggtttgttttagttaatcaaaatttgtgtcttgtttggttaaggaagtagaaaaa 7381643  T
Q  354 tggctttatattgtttttggttg 376  Q
    ||| ||| ||||  |||||||||    
T  7381642 tgggtttgtattagttttggttg 7381620  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 7381820 - 7381787
Alignment:
Q  44 ttgtttggataaggaaatagaataatgggtttgt 77  Q
    |||||||| |||||||||||||||||||||||||    
T  7381820 ttgtttggttaaggaaatagaataatgggtttgt 7381787  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 165
Target Start/End: Complemental strand, 19174946 - 19174918
Alignment:
Q  137 gatattggtgataatttgagaaaataaat 165  Q
    |||||||||||||||||||||||||||||    
T  19174946 gatattggtgataatttgagaaaataaat 19174918  T

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