View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_2D_low_20 (Length: 352)
Name: NF9115_2D_low_20
Description: NF9115_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_2D_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 5 - 337
Target Start/End: Complemental strand, 22198735 - 22198403
Alignment:
| Q |
5 |
cattcctaccacgactgtaacattgatctttgcatgtccatcttccaaccaaccaatcaatttatcactttggactttgaaacccacaatttcagtttga |
104 |
Q |
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| T |
22198735 |
cattcctaccacgactgtaacattgctctttgcatgtccatcttccaaccaaccaatcaatttatcactttgggctttgaaacccacaatttcagtttga |
22198636 |
T |
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| Q |
105 |
ctcggataatagatgtgtggaggggtcatactcatccatgccacatctgagttttatgtagaactacttagtttttgttcggaagaagacttactttcga |
204 |
Q |
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| T |
22198635 |
cccggataatagatctgtggaggggtcatactcatccatgccacatctgggttttttgtagaaccacttagtttttgttcggaagaagacttactttcgg |
22198536 |
T |
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| Q |
205 |
taccgccattgattttacctaaatcttatttaatttcttcaaccttacgcacaatttgaaactgatcacaacacctcatgttgacaaatttagcattgcc |
304 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
22198535 |
taccgccattgattttacctaaatcttgtttaatttcttcaaccttgcgcgcaatttgaaaccgatcacaacacctcatgttgacaaatttagcactgcc |
22198436 |
T |
|
| Q |
305 |
acgaggcaaagtcacacatcaattaccatgatg |
337 |
Q |
| |
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|| ||| |||||||||||||||||||||||||| |
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| T |
22198435 |
acaaggtaaagtcacacatcaattaccatgatg |
22198403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 4 - 337
Target Start/End: Complemental strand, 22195979 - 22195647
Alignment:
| Q |
4 |
ccattcctaccacgactgtaacattgatctttgcatgtccatcttccaaccaaccaatcaatttatcactttggactttgaaacccacaatttcagtttg |
103 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22195979 |
ccattcctaccacgactgtaacattgctctttgcatgttcatcttccaaccaaccaatcaatttatcactttggactttgaaacccacaatttcagtttg |
22195880 |
T |
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| Q |
104 |
actcggataatagatgtgtggaggggtcatactcatccatgccacatctgagttttatgtagaactacttagtttttgttcggaagaagacttactttcg |
203 |
Q |
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|| |||||||||||| ||||||||||||||||||||| |||||| | ||| |||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22195879 |
acccggataatagatatgtggaggggtcatactcatc-atgccatacctgggtttcttttagaactacttagtttttgttcggaagaagacttactttcg |
22195781 |
T |
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| Q |
204 |
ataccgccattgattttacctaaatcttatttaatttcttcaaccttacgcacaatttgaaactgatcacaacacctcatgttgacaaatttagcattgc |
303 |
Q |
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||||| ||||||||||||||||| || |||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
22195780 |
gtaccgtgattgattttacctaaatattgtttaatttcttcaaccttgcgcgcaatttgaaaccgatcacaacacctcatgttgacaaatttagcactgc |
22195681 |
T |
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| Q |
304 |
cacgaggcaaagtcacacatcaattaccatgatg |
337 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
22195680 |
cacgaggtaaagtcacacatcaattaccatgatg |
22195647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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