View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9115_2D_low_21 (Length: 334)
Name: NF9115_2D_low_21
Description: NF9115_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_2D_low_21 |
 | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 1282934 - 1282653
Alignment:
| Q |
18 |
caaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcc |
117 |
Q |
| |
|
|||||||||||| || |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1282934 |
caaactagcaaaactacttcaccttagaggcttttacataacctttgttaatactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcc |
1282835 |
T |
|
| Q |
118 |
ttagatggtttgactgattttagcttcgaaacaatcccagatggtctaacaacactagaaggagacggtgatgttagtcaagatgtaccaactctttgtc |
217 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| |||||||||||||||||| |||||||||| || ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
1282834 |
ctagatggtttcactgattttagctttgaaaccatcccagatggtctaacatcactagaaggtgatggtgatgttagtcaacatgtaccttctctttgtc |
1282735 |
T |
|
| Q |
218 |
aatcagtaagaaagaatttccttaaaccctattgtgaacttattactaggcttaatcactctgccaatgtcccaccagttac |
299 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||| ||||||||||| |
|
|
| T |
1282734 |
aatctataagaaagaatttccttaaaccctattgtgaacttattactagacttaatcactctgctactgttccaccagttac |
1282653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 35776316 - 35776276
Alignment:
| Q |
49 |
tttcacataacctttgttaacactgaatacaatcacaaacg |
89 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| |||||||| |
|
|
| T |
35776316 |
tttcacataacctttgtgaacactgaattcaaccacaaacg |
35776276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 35842123 - 35842083
Alignment:
| Q |
49 |
tttcacataacctttgttaacactgaatacaatcacaaacg |
89 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| |||||||| |
|
|
| T |
35842123 |
tttcacataacctttgtgaacactgaattcaaccacaaacg |
35842083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 35854631 - 35854591
Alignment:
| Q |
49 |
tttcacataacctttgttaacactgaatacaatcacaaacg |
89 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| |||||||| |
|
|
| T |
35854631 |
tttcacataacctttgtgaacactgaattcaaccacaaacg |
35854591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 35869240 - 35869200
Alignment:
| Q |
49 |
tttcacataacctttgttaacactgaatacaatcacaaacg |
89 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| |||||||| |
|
|
| T |
35869240 |
tttcacataacctttgtgaacactgaattcaaccacaaacg |
35869200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 178; Significance: 6e-96; HSPs: 29)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 4618802 - 4618521
Alignment:
| Q |
18 |
caaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4618802 |
caaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggct |
4618703 |
T |
|
| Q |
118 |
ttagatggtttgactgattttagcttcgaaacaatcccagatggtctaacaacactagaaggagacggtgatgttagtcaagatgtaccaactctttgtc |
217 |
Q |
| |
|
|| |||||||| || || |||| ||| || | || ||||||||| ||||| || | ||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
4618702 |
tttgatggtttcacggactttaactttgagagcattccagatggtttaacaccaatggaaggtgatggtgatgttagtcaagatgtaccaactctttgtc |
4618603 |
T |
|
| Q |
218 |
aatcagtaagaaagaatttccttaaaccctattgtgaacttattactaggcttaatcactctgccaatgtcccaccagttac |
299 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |||| || ||||| |||||| ||||||| ||||||||||| |
|
|
| T |
4618602 |
aatcagtaagaaagaacttccttaaaccctattgtgaacttcttacaagacttaaccactctaccaatgttccaccagttac |
4618521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 4594511 - 4594230
Alignment:
| Q |
18 |
caaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcc |
117 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
4594511 |
caaacttgcaaaacttcttcaccttagaggatttcacataacctttgtcaacactgaatacaatcataaacgtttgctcaaatcaagaggtccaaatgcc |
4594412 |
T |
|
| Q |
118 |
ttagatggtttgactgattttagcttcgaaacaatcccagatggtctaacaacactagaaggagacggtgatgttagtcaagatgtaccaactctttgtc |
217 |
Q |
| |
|
||||||||||| ||| ||||||||| ||||| || ||||||||||||||| || | ||||| || ||||||||||||||||| |||| ||||| || |
|
|
| T |
4594411 |
ttagatggtttccctggttttagctttgaaaccataccagatggtctaacaccaatggaaggtgatggtgatgttagtcaagacataccctctcttgctc |
4594312 |
T |
|
| Q |
218 |
aatcagtaagaaagaatttccttaaaccctattgtgaacttattactaggcttaatcactctgccaatgtcccaccagttac |
299 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||| |||| || |||||| ||||| ||||||| ||||||||||| |
|
|
| T |
4594311 |
aatctataagaaagaatttccttaaacccttttgtgaacttcttacaagacttaatgactctaccaatgttccaccagttac |
4594230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 4603610 - 4603330
Alignment:
| Q |
19 |
aaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcct |
118 |
Q |
| |
|
||||||||||| || ||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
4603610 |
aaactagcaaaactatttcaccttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcct |
4603511 |
T |
|
| Q |
119 |
tagatggtttgactgattttagcttcgaaacaatcccagatggtctaacaacactagaaggagacggtgatgttagtcaagatgtaccaactctttgtca |
218 |
Q |
| |
|
|||| || || |||||||||||||| ||||||||||||||||| |||||| | | ||||| || | | ||||||||||||||||||| || ||| ||| |
|
|
| T |
4603510 |
tagacggcttcactgattttagctttgaaacaatcccagatggactaacaccgatggaaggtgatgataatgttagtcaagatgtaccttctatttctca |
4603411 |
T |
|
| Q |
219 |
atcagtaagaaagaatttccttaaaccctattgtgaacttattactaggcttaatcactctgccaatgtcccaccagttac |
299 |
Q |
| |
|
||| |||||||||||||||||||||||| |||||||||| |||| || |||||||||||| ||||||| ||||||||||| |
|
|
| T |
4603410 |
atctataagaaagaatttccttaaacccttttgtgaacttcttacaagacttaatcactctaccaatgttccaccagttac |
4603330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 4565530 - 4565249
Alignment:
| Q |
18 |
caaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcc |
117 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||| |
|
|
| T |
4565530 |
caaacttgcaaaacttcttcaccttagaggatttcatataacctttgtcaacactgaatacaatcataaacgattgctaaaatcaagaggtccaaatgcc |
4565431 |
T |
|
| Q |
118 |
ttagatggtttgactgattttagcttcgaaacaatcccagatggtctaacaacactagaaggagacggtgatgttagtcaagatgtaccaactctttgtc |
217 |
Q |
| |
|
|||||||||| || |||| |||| ||||| || ||||||||||||||| | ||||||| || ||||||||||||||||||||||| ||||| || |
|
|
| T |
4565430 |
ttagatggttcccgtggtttttgctttgaaaccataccagatggtctaacaccgatagaaggtgatggtgatgttagtcaagatgtaccttctcttgctc |
4565331 |
T |
|
| Q |
218 |
aatcagtaagaaagaatttccttaaaccctattgtgaacttattactaggcttaatcactctgccaatgtcccaccagttac |
299 |
Q |
| |
|
|||| ||||||| |||||||||||||| | |||||||||| |||| || |||||| ||||||||||||| ||||||||||| |
|
|
| T |
4565330 |
aatctataagaaaaaatttccttaaacctttttgtgaacttcttacaagacttaatgactctgccaatgttccaccagttac |
4565249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 21 - 258
Target Start/End: Complemental strand, 4627648 - 4627411
Alignment:
| Q |
21 |
actagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctta |
120 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
4627648 |
actagcaaaattacttcaccttagaggctttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgccttt |
4627549 |
T |
|
| Q |
121 |
gatggtttgactgattttagcttcgaaacaatcccagatggtctaacaacactagaaggagacggtgatgttagtcaagatgtaccaactctttgtcaat |
220 |
Q |
| |
|
|||||||| |||||||| ||| || || || ||||||||| ||||| |||||||||| || || ||||||| |||||| ||||| |||||| |||| |
|
|
| T |
4627548 |
gatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccatctctttcccaat |
4627449 |
T |
|
| Q |
221 |
cagtaagaaagaatttccttaaaccctattgtgaactt |
258 |
Q |
| |
|
|| |||||||||| |||||| | |||| | |||||||| |
|
|
| T |
4627448 |
caataagaaagaacttccttcagccctttggtgaactt |
4627411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 4488825 - 4489028
Alignment:
| Q |
19 |
aaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcct |
118 |
Q |
| |
|
||||||| ||| || |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4488825 |
aaactaggaaaactacttcaccttagaggatttcacataacctttgtcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcct |
4488924 |
T |
|
| Q |
119 |
tagatggtttgactgattttagcttcgaaacaatcccagatggtctaacaacactagaaggagacggtgatgttagtcaagatgtaccaactctttgtca |
218 |
Q |
| |
|
| |||||||| |||||||||||||| || || || ||||||||| |||| || ||| || || || ||||||||||||||| ||| ||||||||| |
|
|
| T |
4488925 |
ttgatggtttaactgattttagctttgagactattccagatggtttaactccaacagatggtgatggcgatgttagtcaagatttacgcgctctttgtct |
4489024 |
T |
|
| Q |
219 |
atca |
222 |
Q |
| |
|
|||| |
|
|
| T |
4489025 |
atca |
4489028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 21 - 283
Target Start/End: Complemental strand, 4581512 - 4581250
Alignment:
| Q |
21 |
actagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctta |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
4581512 |
actagcaaagcttcttcaccttagaggctttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcgttt |
4581413 |
T |
|
| Q |
121 |
gatggtttgactgattttagcttcgaaacaatcccagatggtctaacaacactagaaggagacggtgatgttagtcaagatgtaccaactctttgtcaat |
220 |
Q |
| |
|
|||||||| || ||||||| ||| || || || ||||||||| |||| | ||||||| || ||||||||| |||||| || |||| ||| ||| |
|
|
| T |
4581412 |
gatggtttcaccgattttacctttgagactattccagatggtttaactccgatagaaggcgatagtgatgttaatcaagacatatatgctctatgtgaat |
4581313 |
T |
|
| Q |
221 |
cagtaagaaagaatttccttaaaccctattgtgaacttattactaggcttaatcactctgcca |
283 |
Q |
| |
|
|| | |||||||| ||||| |||| | |||||||||| || |||| |||||| ||||||||| |
|
|
| T |
4581312 |
caatcagaaagaacttcctacaacctttttgtgaacttcttgctagacttaatgactctgcca |
4581250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 4517840 - 4517659
Alignment:
| Q |
19 |
aaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcct |
118 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
4517840 |
aaactagcaaaacttcttcatcttagaggctttcacataacctttgtcaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtccaaaagcct |
4517741 |
T |
|
| Q |
119 |
tagatggtttgactgattttagcttcgaaacaatcccagatggtctaacaacactagaaggagacggtgatgttagtcaaga |
200 |
Q |
| |
|
| |||||||| |||||||||| ||| || || || ||||||||| |||| | ||||||| || ||||||||||||||||| |
|
|
| T |
4517740 |
ttgatggtttcactgattttacctttgagactattccagatggtttaactccgatagaaggcgatggtgatgttagtcaaga |
4517659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 4623808 - 4623568
Alignment:
| Q |
18 |
caaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcc |
117 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4623808 |
caaactagcaaagcttctttaccttaaaggctttcacataacctttggtcacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcc |
4623709 |
T |
|
| Q |
118 |
ttagatggtttgactgattttagcttcgaaacaatcccagatggtctaacaacactagaaggagacggtgatgttagtcaagatgtaccaactctttgtc |
217 |
Q |
| |
|
|| |||||||| || || |||| ||| || || || ||||||||| ||||| || | ||||| || ||||||||||||||||| |||| |||||| | |
|
|
| T |
4623708 |
tttgatggtttcacggactttaactttgagaccattccagatggtttaacaccaatggaaggtgatggtgatgttagtcaagacataccctctctttctg |
4623609 |
T |
|
| Q |
218 |
aatcagtaagaaagaatttccttaaaccctattgtgaactt |
258 |
Q |
| |
|
| ||| |||| ||||||||| | | |||| |||||||||| |
|
|
| T |
4623608 |
attcaataaggaagaatttctatcatcccttttgtgaactt |
4623568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 3173503 - 3173322
Alignment:
| Q |
19 |
aaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcct |
118 |
Q |
| |
|
||||||||||| || |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
3173503 |
aaactagcaaaactacttcactttagaggctttcacataacctttgtaaacactgaatacaatcacaaacggttgctcaaatcaaagggtccaaatgcct |
3173404 |
T |
|
| Q |
119 |
tagatggtttgactgattttagcttcgaaacaatcccagatggtctaacaacactagaaggagacggtgatgttagtcaaga |
200 |
Q |
| |
|
| |||||||| | |||||||| ||| || || || ||||||||| |||| || | ||||| || ||||||||||||||||| |
|
|
| T |
3173403 |
ttgatggtttcaatgattttaactttgagactataccagatggtttaacttcaatggaaggtgatggtgatgttagtcaaga |
3173322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 4507412 - 4507291
Alignment:
| Q |
18 |
caaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcc |
117 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4507412 |
caaactagctaagcttcttcaccttcgaggctttcacataacctttgttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaatgcc |
4507313 |
T |
|
| Q |
118 |
ttagatggtttgactgatttta |
139 |
Q |
| |
|
|| |||||||| |||||||||| |
|
|
| T |
4507312 |
tttgatggtttcactgatttta |
4507291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 4612345 - 4612492
Alignment:
| Q |
18 |
caaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcc |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4612345 |
caaactagcaaaacttcttcaccttagaggctttcacataacattcgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcc |
4612444 |
T |
|
| Q |
118 |
ttagatggtttgactgattttagcttcgaaacaatcccagatggtcta |
165 |
Q |
| |
|
|| | |||||| |||||||||| ||| || | || |||||||||||| |
|
|
| T |
4612445 |
tttgttggtttcactgattttacctttgaggctataccagatggtcta |
4612492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 4558625 - 4558501
Alignment:
| Q |
19 |
aaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcct |
118 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||| ||| |||||||||||||| |||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
4558625 |
aaactagcaaaacttcttcaccttagaggatttcacataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcct |
4558526 |
T |
|
| Q |
119 |
tagatggtttgactgattttagctt |
143 |
Q |
| |
|
| |||||||| |||||||||||||| |
|
|
| T |
4558525 |
ttgatggtttcactgattttagctt |
4558501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 23 - 167
Target Start/End: Complemental strand, 4575951 - 4575807
Alignment:
| Q |
23 |
tagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgccttaga |
122 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| || |
|
|
| T |
4575951 |
tagcaaaactgcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttga |
4575852 |
T |
|
| Q |
123 |
tggtttgactgattttagcttcgaaacaatcccagatggtctaac |
167 |
Q |
| |
|
|||||| ||||| |||| ||| || || || ||||||||| |||| |
|
|
| T |
4575851 |
tggtttcactgactttaactttgagactataccagatggtttaac |
4575807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 22 - 167
Target Start/End: Original strand, 4265688 - 4265833
Alignment:
| Q |
22 |
ctagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgccttag |
121 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | | |
|
|
| T |
4265688 |
ctaggaaagcttcttcaccttagaggctttcacataacctttgtcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaattctcttg |
4265787 |
T |
|
| Q |
122 |
atggtttgactgattttagcttcgaaacaatcccagatggtctaac |
167 |
Q |
| |
|
||||||| | ||| |||| || || || || |||||||||||||| |
|
|
| T |
4265788 |
atggtttcagtgactttaagtttgagaccataccagatggtctaac |
4265833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 41 - 200
Target Start/End: Original strand, 4502943 - 4503102
Alignment:
| Q |
41 |
ttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgccttagatggtttgactgattttag |
140 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||| |
|
|
| T |
4502943 |
ttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttac |
4503042 |
T |
|
| Q |
141 |
cttcgaaacaatcccagatggtctaacaacactagaaggagacggtgatgttagtcaaga |
200 |
Q |
| |
|
||| || || || ||||||||| |||| | | ||||| || ||||||||||||||||| |
|
|
| T |
4503043 |
ctttgagaccataccagatggtttaactccggtggaaggtgatggtgatgttagtcaaga |
4503102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 34 - 167
Target Start/End: Complemental strand, 4482350 - 4482217
Alignment:
| Q |
34 |
cttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgccttagatggtttgactg |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||| |||||||| ||||| |||||||| |||| |
|
|
| T |
4482350 |
cttcaccttagaggctttcacataacctttgtcaacaccgaatacaatcacaaacgtttgctaaaatcaaggggtccaaaagcctttgatggtttcactg |
4482251 |
T |
|
| Q |
134 |
attttagcttcgaaacaatcccagatggtctaac |
167 |
Q |
| |
|
|||||| ||| ||||| || ||||||||| |||| |
|
|
| T |
4482250 |
attttacctttgaaacgataccagatggtttaac |
4482217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 4587132 - 4586951
Alignment:
| Q |
19 |
aaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcct |
118 |
Q |
| |
|
|||||||| || |||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||| ||||||||||| |
|
|
| T |
4587132 |
aaactagctaaacttcttcaccttcgaggatttcacataacctttgtaaacactgaatacaatcacaaacggttgcttaagtcaagagctccaaatgcct |
4587033 |
T |
|
| Q |
119 |
tagatggtttgactgattttagcttcgaaacaatcccagatggtctaacaacactagaaggagacggtgatgttagtcaaga |
200 |
Q |
| |
|
| |||| ||| |||||||||||||| || || || ||||||||| |||| || || || || ||||||||||||||||| |
|
|
| T |
4587032 |
ttgatgatttaactgattttagctttgagactattccagatggtttaactccaacggatggtgatggtgatgttagtcaaga |
4586951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 4258803 - 4259043
Alignment:
| Q |
18 |
caaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcc |
117 |
Q |
| |
|
||||||||| |||||||||||| ||| ||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
4258803 |
caaactagctaagcttcttcactttaaaggttttcacataacctttgtcaacactgaatataatcacaaacgtttgctcaaatcaagaggtgaaaatgcc |
4258902 |
T |
|
| Q |
118 |
ttagatggtttgactgattttagcttcgaaacaatcccagatggtctaacaacactagaaggagacggtgatgttagtcaagatgtaccaactctttgtc |
217 |
Q |
| |
|
| |||||||| | |||||||| ||| || || || | ||||||||| || || | ||||| || || ||||||| |||||| ||||| | |||| || |
|
|
| T |
4258903 |
gttgatggtttcattgattttacctttgagactattcaagatggtctgactccagtggaaggtgatggcgatgttactcaagacgtaccctccctttctc |
4259002 |
T |
|
| Q |
218 |
aatcagtaagaaagaatttccttaaaccctattgtgaactt |
258 |
Q |
| |
|
|||| |||||||||| |||||| | |||| | |||||||| |
|
|
| T |
4259003 |
aatctataagaaagaacttccttcagccctttggtgaactt |
4259043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 4513611 - 4513731
Alignment:
| Q |
23 |
tagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgccttaga |
122 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| || || |
|
|
| T |
4513611 |
tagcaaaactacttcaccttagaggctttcacataacctttgttaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttga |
4513710 |
T |
|
| Q |
123 |
tggtttgactgattttagctt |
143 |
Q |
| |
|
|||||| || |||||| |||| |
|
|
| T |
4513711 |
tggtttcaccgattttcgctt |
4513731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 4569570 - 4569426
Alignment:
| Q |
19 |
aaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcct |
118 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
4569570 |
aaactagcaaaacttcttcaccttagaggctttcacataacctttgtcaacaccgaa----atcacaaacatttgctcaaatcaagaggtccaaaagcct |
4569475 |
T |
|
| Q |
119 |
tagatggtttgactgattttagcttcgaaacaatcccagatggtctaac |
167 |
Q |
| |
|
| |||||||| |||||||||| ||| || || || ||||||||| |||| |
|
|
| T |
4569474 |
ttgatggtttcactgattttacctttgagactattccagatggtttaac |
4569426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 4572465 - 4572357
Alignment:
| Q |
20 |
aactagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctt |
119 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| |||||||| |||||||||| ||||||||| |
|
|
| T |
4572465 |
aactagcaaaatttcttcaccttagaggttttcacataacctatgtaaacactgaatacaatcacaaacggttgctcaagtcaagaggtcaaaatgcctt |
4572366 |
T |
|
| Q |
120 |
agatggttt |
128 |
Q |
| |
|
|||||||| |
|
|
| T |
4572365 |
tgatggttt |
4572357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 4471414 - 4471323
Alignment:
| Q |
19 |
aaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtcc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
4471414 |
aaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcc |
4471323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 167
Target Start/End: Complemental strand, 4562158 - 4562014
Alignment:
| Q |
23 |
tagcaaagcttcttcaccttagaggctttcacataa-cctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgccttag |
121 |
Q |
| |
|
||||||| || |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||| | |
|
|
| T |
4562158 |
tagcaaaactgcttcacctaagaggctttcacataaacctttgttaacactgaatacaatcacaaacgtttgct-aaatcaagaggtgaaaatgcctttg |
4562060 |
T |
|
| Q |
122 |
atggtttgactgattttagcttcgaaacaatcccagatggtctaac |
167 |
Q |
| |
|
||||||| ||||| |||| ||| || || || ||||||||| |||| |
|
|
| T |
4562059 |
atggtttcactgactttaactttgagactataccagatggtttaac |
4562014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 4599664 - 4599489
Alignment:
| Q |
18 |
caaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgc- |
116 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||| |||||||||| || ||||| || ||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
4599664 |
caaactagcaaagattcttcaccttagaggattttacataaccttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcctaattct |
4599565 |
T |
|
| Q |
117 |
cttagatggtttgactgattttagcttcgaaacaatcccagatggtctaacaacactagaaggagacggtgatgtta |
193 |
Q |
| |
|
| || ||||||| ||||||||| |||||| || || ||||||||| |||| || |||| || || |||||||||| |
|
|
| T |
4599564 |
cgta-atggtttcactgatttttccttcgagactattccagatggtttaactccaatagatggtgatggtgatgtta |
4599489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 4462707 - 4462587
Alignment:
| Q |
19 |
aaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcct |
118 |
Q |
| |
|
||||||| ||| || |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||| ||| | |
|
|
| T |
4462707 |
aaactaggaaaactacttcaccttagaggttttcacataacctttgtcaacactgaatacaatcacaattgcttgctcaattcaagaggtcctaattctc |
4462608 |
T |
|
| Q |
119 |
tagatggtttgactgatttta |
139 |
Q |
| |
|
|||||||||| ||||| |||| |
|
|
| T |
4462607 |
tagatggtttcactgacttta |
4462587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 4255478 - 4255545
Alignment:
| Q |
60 |
ctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgccttagatggtt |
127 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||| |||||||||||||||| ||||| ||||||| |
|
|
| T |
4255478 |
ctttgtcaacaccgaatacaatcacaaacgcttgctcgaatcaagaggtccaaaagcctttgatggtt |
4255545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 258
Target Start/End: Original strand, 4298174 - 4298365
Alignment:
| Q |
67 |
aacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgccttagatggtttgactgattttagcttcgaaacaatcccagatggtctaa |
166 |
Q |
| |
|
||||| |||||||||||||||| | ||||| ||||||| |||||||| || || |||||||| || | |||||||| || || || ||||||||||| | |
|
|
| T |
4298174 |
aacaccgaatacaatcacaaacacctgctcgaatcaaggggtccaaaagcttttgatggtttcaccaactttagctttgagactattccagatggtctga |
4298273 |
T |
|
| Q |
167 |
caacactagaaggagacggtgatgttagtcaagatgtaccaactctttgtcaatcagtaagaaagaatttccttaaaccctattgtgaactt |
258 |
Q |
| |
|
| || ||||| || || ||||||| |||||| ||||| |||||| |||||| | |||||||| |||||| | |||| | |||||||| |
|
|
| T |
4298274 |
ctccaacggaaggtgatggagatgttactcaagacataccatctctttcccaatcaatcagaaagaacttccttcagccctttggtgaactt |
4298365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 109
Target Start/End: Original strand, 4483534 - 4483569
Alignment:
| Q |
74 |
aatacaatcacaaacgcttgctcaaatcaagaggtc |
109 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4483534 |
aatacaatcacaaacgtttgctcaaatcaagaggtc |
4483569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 1259 - 981
Alignment:
| Q |
18 |
caaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcc |
117 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| ||| |||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
1259 |
caaactagcaaaacttattcaccttagaggctctcatgtaacctatgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgcc |
1160 |
T |
|
| Q |
118 |
ttagatggtttgactgattttagcttcgaaacaatcccagatggtctaacaacactagaaggagacggtgatgttagtcaagatgtaccaactctttgtc |
217 |
Q |
| |
|
|| |||||||| |||||||||||||| ||||| |||||||||||||||||| |||||||||| || ||||||||||||||| |||| ||||||||| |
|
|
| T |
1159 |
ttggatggtttcactgattttagctttgaaaccatcccagatggtctaacaccactagaaggtgatggtgatgttagtcaa---ctaccttctctttgtc |
1063 |
T |
|
| Q |
218 |
aatcagtaagaaagaatttccttaaaccctattgtgaacttattactaggcttaatcactctgccaatgtcccaccagttac |
299 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||| |||| ||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
1062 |
aatctataagaaagaatttccttaaacccttttgtgaactcattaatagacttaatcactctgccaatgttccaccagttac |
981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 1676022 - 1675744
Alignment:
| Q |
18 |
caaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcc |
117 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| ||| |||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
1676022 |
caaactagcaaaacttattcaccttagaggctctcatgtaacctatgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgcc |
1675923 |
T |
|
| Q |
118 |
ttagatggtttgactgattttagcttcgaaacaatcccagatggtctaacaacactagaaggagacggtgatgttagtcaagatgtaccaactctttgtc |
217 |
Q |
| |
|
|| |||||||| |||||||||||||| ||||| |||||||||||||||||| |||||||||| || ||||||||||||||| |||| ||||||||| |
|
|
| T |
1675922 |
ttggatggtttcactgattttagctttgaaaccatcccagatggtctaacaccactagaaggtgatggtgatgttagtcaa---ctaccttctctttgtc |
1675826 |
T |
|
| Q |
218 |
aatcagtaagaaagaatttccttaaaccctattgtgaacttattactaggcttaatcactctgccaatgtcccaccagttac |
299 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||| |||| ||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
1675825 |
aatctataagaaagaatttccttaaacccttttgtgaactcattaatagacttaatcactctgccaatgttccaccagttac |
1675744 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 20862438 - 20862562
Alignment:
| Q |
19 |
aaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcct |
118 |
Q |
| |
|
||||||||||| || |||||||||||||||||| ||||||| ||||| || |||||||||||||||||||||||||| || |||| ||||||| ||| |
|
|
| T |
20862438 |
aaactagcaaaactacttcaccttagaggcttttacataacatttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccct |
20862537 |
T |
|
| Q |
119 |
tagatggtttgactgattttagctt |
143 |
Q |
| |
|
| |||||||| ||||| ||| |||| |
|
|
| T |
20862538 |
ttgatggtttcactgactttcgctt |
20862562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 2325 - 2176
Alignment:
| Q |
18 |
caaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
2325 |
caaactagcaaagcttcttcaccttagaggctttcacataacctttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgct |
2226 |
T |
|
| Q |
118 |
ttagatggtttgactgattttagcttcgaaacaatcccagatggtctaac |
167 |
Q |
| |
|
| |||||||| |||||||| ||||||| || || || |||||| |||| |
|
|
| T |
2225 |
cttgatggtttcgctgatttttgcttcgagactattcccgatggtttaac |
2176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 2078 - 2227
Alignment:
| Q |
18 |
caaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
2078 |
caaactagcaaagcttcttcaccttagaggctttcacataacctttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgct |
2177 |
T |
|
| Q |
118 |
ttagatggtttgactgattttagcttcgaaacaatcccagatggtctaac |
167 |
Q |
| |
|
| |||||||| |||||||| ||||||| || || || |||||| |||| |
|
|
| T |
2178 |
cttgatggtttcgctgatttttgcttcgagactattcccgatggtttaac |
2227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 3088245 - 3088006
Alignment:
| Q |
19 |
aaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcct |
118 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||||||| || || |||||||||||||| || ||||| |||||||||||| | ||| | |
|
|
| T |
3088245 |
aaactagcaaaacttcttcaccttaaaggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctc |
3088146 |
T |
|
| Q |
119 |
tagatggtttgactgattttagcttcgaaacaatcccagatggtctaacaacactagaaggagacggtgatgttagtcaagatgtaccaactctttgtca |
218 |
Q |
| |
|
| |||||||| ||||||||| ||| || || |||| |||||||||||| || | ||||| | ||||||||||||||||| | || |||||||||| |
|
|
| T |
3088145 |
ttgatggtttcactgattttgtctttgagactatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaagacttggcatctctttgtca |
3088046 |
T |
|
| Q |
219 |
atcagtaagaaagaatttccttaaaccctattgtgaactt |
258 |
Q |
| |
|
|||||| ||||||| ||| || |||||| | |||||||| |
|
|
| T |
3088045 |
atcagttggaaagaacttcattcaaccctttggtgaactt |
3088006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 24104596 - 24104414
Alignment:
| Q |
18 |
caaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcc |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||| ||||||||| ||| ||| | |
|
|
| T |
24104596 |
caaactaggaaagcttcttcaccttagaggctttcacataaccttcgtgaacaccgaatacaatcacaaacgcttgctcgaatcaagagatcctaattct |
24104497 |
T |
|
| Q |
118 |
ttagatggtttgactgattttagcttcgaaacaatcccagatggtctaacaacactagaaggagacggtgatgttagtcaaga |
200 |
Q |
| |
|
| |||||||| | ||| |||| ||| || || || |||||||||||||| || | ||||| | |||||||||| |||||| |
|
|
| T |
24104496 |
cttgatggtttcaatgactttaactttgagaccataccagatggtctaactccaatggaaggcaatggtgatgttactcaaga |
24104414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 89
Target Start/End: Complemental strand, 26903670 - 26903639
Alignment:
| Q |
58 |
acctttgttaacactgaatacaatcacaaacg |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
26903670 |
acctttgttaacactgaatacaatcacaaacg |
26903639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 1349579 - 1349641
Alignment:
| Q |
53 |
acataacctttgttaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatg |
115 |
Q |
| |
|
||||||| ||||| |||||||||| ||| ||||||||||| |||||||| | |||||| |||| |
|
|
| T |
1349579 |
acataacatttgtcaacactgaattcaaccacaaacgcttactcaaatccataggtcctaatg |
1349641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 334
Target Start/End: Original strand, 35928436 - 35928469
Alignment:
| Q |
301 |
atatatatatttaggcaccacaatcgacaaaagc |
334 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
35928436 |
atatatatatttagtcaccacaatcgacaaaagc |
35928469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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