View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9115_2D_low_29 (Length: 262)

Name: NF9115_2D_low_29
Description: NF9115_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9115_2D_low_29
NF9115_2D_low_29
[»] chr8 (10 HSPs)
chr8 (17-116)||(45098749-45098848)
chr8 (172-262)||(45098904-45098994)
chr8 (173-242)||(6526184-6526253)
chr8 (179-246)||(39049337-39049404)
chr8 (185-246)||(2487952-2488013)
chr8 (182-241)||(7918722-7918781)
chr8 (173-246)||(6950387-6950460)
chr8 (172-216)||(1561372-1561416)
chr8 (173-241)||(16162830-16162898)
chr8 (180-240)||(43504822-43504882)
[»] chr4 (4 HSPs)
chr4 (174-241)||(18628486-18628553)
chr4 (173-246)||(42641571-42641644)
chr4 (173-205)||(1075564-1075596)
chr4 (183-235)||(28615411-28615462)
[»] chr7 (4 HSPs)
chr7 (188-241)||(30535633-30535686)
chr7 (192-246)||(36537973-36538027)
chr7 (173-246)||(23214920-23214993)
chr7 (173-205)||(529468-529500)
[»] chr2 (7 HSPs)
chr2 (173-246)||(787397-787470)
chr2 (173-246)||(4350755-4350828)
chr2 (174-246)||(13866943-13867015)
chr2 (173-246)||(2964741-2964814)
chr2 (173-246)||(28803462-28803535)
chr2 (182-246)||(12140597-12140661)
chr2 (182-246)||(40145517-40145581)
[»] chr6 (4 HSPs)
chr6 (172-216)||(34429645-34429689)
chr6 (173-246)||(2455875-2455948)
chr6 (172-248)||(27857421-27857497)
chr6 (186-246)||(32577931-32577991)
[»] chr5 (5 HSPs)
chr5 (173-216)||(10771820-10771863)
chr5 (173-246)||(2568723-2568796)
chr5 (180-241)||(4273316-4273377)
chr5 (181-246)||(12459941-12460006)
chr5 (173-205)||(34117480-34117512)
[»] chr1 (4 HSPs)
chr1 (186-241)||(4033962-4034017)
chr1 (173-216)||(35017677-35017720)
chr1 (183-242)||(36070250-36070309)
chr1 (173-238)||(31517672-31517737)
[»] chr3 (4 HSPs)
chr3 (181-246)||(8797752-8797816)
chr3 (180-245)||(50211801-50211866)
chr3 (179-239)||(41644383-41644443)
chr3 (173-241)||(44014730-44014798)


Alignment Details
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 45098749 - 45098848
Alignment:
Q  17 catcaaattcaccaacattagtcccagaatcccacctatccatagcagaaattgatcacagtaaatatcaccaactaaagaactaccatatagagtctga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45098749 catcaaattcaccaacattagtcccagaatcccacctatccatagcagaaattgatcacagtaaatatcaccaactaaagaactaccatatagagtctga 45098848  T

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Target: chr8; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 172 - 262
Target Start/End: Original strand, 45098904 - 45098994
Alignment:
Q  172 tttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacatctagataaactatttt 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45098904 tttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttatgacatctagataaactatttt 45098994  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 6526184 - 6526253
Alignment:
Q  173 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttata 242  Q
    |||||||||| ||||||||||||||| | |||| ||||||||||  |||||| || ||||||||||||||    
T  6526184 ttattcgagcctatctactggcataagcccttgtgagattgtttgagagaacttaggaaaacaacttata 6526253  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 39049404 - 39049337
Alignment:
Q  179 gagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacat 246  Q
    ||||||||||||| ||||||||| ||| ||||||||||  || | | |||||||||||||||||||||    
T  39049404 gagcttatctactagcataaacatttgtgagattgtttgtgaaagcttatgaaaacaacttataacat 39049337  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 2487952 - 2488013
Alignment:
Q  185 atctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacat 246  Q
    |||||||| ||||| |||||| |||| |||||  |||||| |||||||||||||||||||||    
T  2487952 atctactgacataagcacttgtgagactgtttgggagaacttatgaaaacaacttataacat 2488013  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 7918722 - 7918781
Alignment:
Q  182 cttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttat 241  Q
    |||||||||| ||||||||||||| |||| |||||  |||| | ||||||||||||||||    
T  7918722 cttatctactagcataaacacttgtgagactgtttgggagagcttatgaaaacaacttat 7918781  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 246
Target Start/End: Complemental strand, 6950460 - 6950387
Alignment:
Q  173 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacat 246  Q
    ||||| ||| ||||||||||||||||||| ||| ||||||||||  |||| | |||| ||||||| ||| ||||    
T  6950460 ttatttgagtttatctactggcataaacatttgtgagattgtttgggagagcttatgtaaacaacctatgacat 6950387  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 1561416 - 1561372
Alignment:
Q  172 tttattcgagcttatctactggcataaacacttgagagattgttt 216  Q
    |||||| || |||||||| ||||||||||||||| ||||||||||    
T  1561416 tttatttgatcttatctaatggcataaacacttgtgagattgttt 1561372  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 16162898 - 16162830
Alignment:
Q  173 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttat 241  Q
    ||||| ||| ||||||||| ||||||||||||| |||| |||||  || ||| |||||||||| |||||    
T  16162898 ttatttgagtttatctactagcataaacacttgtgagactgtttgagaaaacttatgaaaacagcttat 16162830  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 43504882 - 43504822
Alignment:
Q  180 agcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaactta 240  Q
    ||||||||||||||| ||| |||||| | || |||||| ||||||  ||||||||||||||    
T  43504882 agcttatctactggcttaagcacttgtgtgactgtttcggagaactgatgaaaacaactta 43504822  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 18628486 - 18628553
Alignment:
Q  174 tattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttat 241  Q
    |||| |||||||||||||| |||||||||||| |||| |||||  |||| | ||||||||||||||||    
T  18628486 tatttgagcttatctactgacataaacacttgtgagactgtttgggagagcttatgaaaacaacttat 18628553  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 42641571 - 42641644
Alignment:
Q  173 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacat 246  Q
    ||||| |||||||||||||||| | |||||||| || | ||||| | ||||| |||||||||| ||||| ||||    
T  42641571 ttatttgagcttatctactggcgtgaacacttgtgatactgttttcaagaacttatgaaaacaccttatgacat 42641644  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 1075596 - 1075564
Alignment:
Q  173 ttattcgagcttatctactggcataaacacttg 205  Q
    ||||| |||||||||||||||||||||||||||    
T  1075596 ttatttgagcttatctactggcataaacacttg 1075564  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 28615462 - 28615411
Alignment:
Q  183 ttatctactggcataaacacttgagagattgtttccgagaacctatgaaaaca 235  Q
    ||||||||| ||||||||||||| ||||||||||  |||||| ||||||||||    
T  28615462 ttatctactagcataaacacttgtgagattgttt-ggagaacttatgaaaaca 28615411  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 30535686 - 30535633
Alignment:
Q  188 tactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttat 241  Q
    ||||| ||||||||||||||||| |||||  |||||| ||||||||||||||||    
T  30535686 tactgacataaacacttgagagactgttttggagaacttatgaaaacaacttat 30535633  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 36538027 - 36537973
Alignment:
Q  192 ggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacat 246  Q
    |||||||||||||| ||||||||||  |||||| |||| ||||||||||| ||||    
T  36538027 ggcataaacacttgtgagattgtttgagagaacttatggaaacaacttatgacat 36537973  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 246
Target Start/End: Complemental strand, 23214993 - 23214920
Alignment:
Q  173 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacat 246  Q
    ||||| || |||||||||| ||||||||||||  |||| |||||  |||||  |||||||||||||||| ||||    
T  23214993 ttatttgaccttatctactagcataaacacttatgagactgtttgagagaatttatgaaaacaacttatgacat 23214920  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 529500 - 529468
Alignment:
Q  173 ttattcgagcttatctactggcataaacacttg 205  Q
    ||||| |||||||||||||||||||||||||||    
T  529500 ttatttgagcttatctactggcataaacacttg 529468  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 246
Target Start/End: Complemental strand, 787470 - 787397
Alignment:
Q  173 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacat 246  Q
    |||||||||| ||||||||||||||| |||||| || | |||||  |||||| |||||||||| ||||| ||||    
T  787470 ttattcgagcatatctactggcataagcacttgtgacactgtttgtgagaacttatgaaaacagcttatgacat 787397  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 246
Target Start/End: Complemental strand, 4350828 - 4350755
Alignment:
Q  173 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacat 246  Q
    ||||| |||||| ||||||| ||||| ||||| |||||||||||  |||||| |||||||||| ||||| ||||    
T  4350828 ttatttgagcttctctactgacataagcacttaagagattgtttgagagaacttatgaaaacagcttatgacat 4350755  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 13867015 - 13866943
Alignment:
Q  174 tattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacat 246  Q
    |||| |||||||||||||| |||||||||||| |||| |||||  |||||| || ||||||||| ||| ||||    
T  13867015 tatttgagcttatctactgccataaacacttgtgagactgtttgagagaacttaagaaaacaacctatgacat 13866943  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 2964741 - 2964814
Alignment:
Q  173 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacat 246  Q
    ||||| || ||||||||| |||||||||||||| |||| |||||  | |||| |||||||||| ||||| ||||    
T  2964741 ttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacat 2964814  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 28803462 - 28803535
Alignment:
Q  173 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacat 246  Q
    ||||| |||||||||||| ||||||| ||| || |||| |||||  |||||| |||| ||||||||||| ||||    
T  28803462 ttatttgagcttatctaccggcataagcacatgtgagactgtttgagagaacatatggaaacaacttatgacat 28803535  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 12140661 - 12140597
Alignment:
Q  182 cttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacat 246  Q
    ||||||||||| |||||||||||  || || ||||  |||||| |||||||||||||||| ||||    
T  12140661 cttatctactgacataaacacttacgaaatagtttgagagaacttatgaaaacaacttatgacat 12140597  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 40145581 - 40145517
Alignment:
Q  182 cttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacat 246  Q
    ||||||||||| |||||||||||  ||| ||||||  |||||| |||  ||||||||||||||||    
T  40145581 cttatctactgacataaacacttatgagcttgtttgagagaacttatcgaaacaacttataacat 40145517  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 34429645 - 34429689
Alignment:
Q  172 tttattcgagcttatctactggcataaacacttgagagattgttt 216  Q
    |||||| ||||||||||||| |||||||||||||||| |||||||    
T  34429645 tttatttgagcttatctactagcataaacacttgagatattgttt 34429689  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 246
Target Start/End: Complemental strand, 2455948 - 2455875
Alignment:
Q  173 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacat 246  Q
    ||||| |||||||||||| ||||||| |||||| ||||||||||   ||| | |||| ||||||||||| ||||    
T  2455948 ttatttgagcttatctaccggcataagcacttgcgagattgtttagaagagcttatggaaacaacttatgacat 2455875  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 27857497 - 27857421
Alignment:
Q  172 tttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacatct 248  Q
    |||||| ||| |||||||||| |||| ||||||| || | |||||  |||| | |||||||||||||||| ||||||    
T  27857497 tttatttgagtttatctactgacatagacacttgtgaaactgtttgggagagcttatgaaaacaacttatgacatct 27857421  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 32577931 - 32577991
Alignment:
Q  186 tctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacat 246  Q
    |||||||||||||| ||||| || |||||||  |||| | |||||||||||||||| ||||    
T  32577931 tctactggcataaatacttgggacattgtttgagagagcttatgaaaacaacttatgacat 32577991  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 10771820 - 10771863
Alignment:
Q  173 ttattcgagcttatctactggcataaacacttgagagattgttt 216  Q
    ||||| |||||||||||||||||||| |||||| ||||||||||    
T  10771820 ttatttgagcttatctactggcataagcacttgtgagattgttt 10771863  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 246
Target Start/End: Complemental strand, 2568796 - 2568723
Alignment:
Q  173 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacat 246  Q
    ||||| |||||||||||||||  ||| ||||||||||| |||||   ||||| |||||||||| ||||| ||||    
T  2568796 ttatttgagcttatctactggtgtaagcacttgagagactgtttagaagaacttatgaaaacagcttatgacat 2568723  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 4273316 - 4273377
Alignment:
Q  180 agcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttat 241  Q
    ||||| |||| ||||||||||| ||| ||||||||||  ||||||||||| ||||| |||||    
T  4273316 agcttgtctattggcataaacatttgtgagattgtttgagagaacctatggaaacagcttat 4273377  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 12459941 - 12460006
Alignment:
Q  181 gcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacat 246  Q
    |||||||| ||| ||||| ||| || |||| |||||  ||||||||||||||||||||||| ||||    
T  12459941 gcttatctgctgacataagcacctgtgagactgtttgggagaacctatgaaaacaacttatgacat 12460006  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 34117480 - 34117512
Alignment:
Q  173 ttattcgagcttatctactggcataaacacttg 205  Q
    ||||| |||||||||||||||||||||||||||    
T  34117480 ttattggagcttatctactggcataaacacttg 34117512  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 4033962 - 4034017
Alignment:
Q  186 tctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttat 241  Q
    |||||||||||||||||||| ||||||||||  |||| | |||||||| |||||||    
T  4033962 tctactggcataaacacttgtgagattgtttgagagagcttatgaaaataacttat 4034017  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 35017720 - 35017677
Alignment:
Q  173 ttattcgagcttatctactggcataaacacttgagagattgttt 216  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||    
T  35017720 ttatttgagcttatctattggcataaacacttgtgagattgttt 35017677  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 36070309 - 36070250
Alignment:
Q  183 ttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttata 242  Q
    |||||| ||||||||| |||||| |||| |||||  |||||| |||||||||||||||||    
T  36070309 ttatcttctggcataagcacttgtgagactgtttaggagaacttatgaaaacaacttata 36070250  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 31517672 - 31517737
Alignment:
Q  173 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaact 238  Q
    ||||| |||||||| ||||||||||| |||||| |||| |||||  |||||| ||| |||||||||    
T  31517672 ttatttgagcttatttactggcataagcacttgtgagactgtttgggagaacttatcaaaacaact 31517737  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 8797816 - 8797752
Alignment:
Q  181 gcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacat 246  Q
    ||||||||||||||||||| ||||| || | |||||  ||||||||||||||||| | ||||||||    
T  8797816 gcttatctactggcataaatacttgtgatactgttt-ggagaacctatgaaaacatcgtataacat 8797752  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 50211866 - 50211801
Alignment:
Q  180 agcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataaca 245  Q
    ||||||||||||  ||||| ||||||  ||| |||||  |||||| ||||||||||||||||||||    
T  50211866 agcttatctactaacataagcacttgtaagactgtttgagagaacttatgaaaacaacttataaca 50211801  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 41644383 - 41644443
Alignment:
Q  179 gagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaactt 239  Q
    ||||||||||||| |||||| ||||||||| | |||||  |||||| ||| ||||||||||    
T  41644383 gagcttatctactagcataagcacttgagacactgtttaggagaacttataaaaacaactt 41644443  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 44014730 - 44014798
Alignment:
Q  173 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttat 241  Q
    ||||| ||| ||||||||| ||||||||||||| |||| |||||  || ||| |||||||||| |||||    
T  44014730 ttatttgagtttatctactagcataaacacttgtgagactgtttgagaaaacttatgaaaacagcttat 44014798  T

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