View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_2D_low_31 (Length: 261)
Name: NF9115_2D_low_31
Description: NF9115_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_2D_low_31 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 33861960 - 33861718
Alignment:
| Q |
19 |
gacatcacatttgacaaacaagacagatggatggtgtaagctaggatgaaacttggtgttaattttctccacaagggttgcggtttctcttcctttttct |
118 |
Q |
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| T |
33861960 |
gacatcacatttgacaaacaagacagatggatggtgtaagttaggatgaaacttggtattaattttctccacaagggttgcggtttctcttcctttttct |
33861861 |
T |
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| Q |
119 |
tcagaaaaatcaacaattgtgataaacacacctttctctgcaagagctagcacaagacctttacctgtataataattgaatgaatttgatattaaccgaa |
218 |
Q |
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| T |
33861860 |
tcagaaaaatcaacaattgtgataaacacacctttctctgcaagagctagcacaagacctttacctgtataataattgaatgaatttgatattaaccgaa |
33861761 |
T |
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| Q |
219 |
cgaaggttgttggaataattgaatattaaagaaaatacgattt |
261 |
Q |
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| T |
33861760 |
cgaaggttgttggaataattgaatattaaagaaaatatgattt |
33861718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 26 - 187
Target Start/End: Complemental strand, 33851859 - 33851698
Alignment:
| Q |
26 |
catttgacaaacaagacagatggatggtgtaagctaggatgaaacttggtgttaattttctccacaagggttgcggtttctcttcctttttcttcagaaa |
125 |
Q |
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| T |
33851859 |
catttgacaaacaagacagatggatggtgtaagttaggatgaaacttggtattaattttctccacaagggttgcggtttctcttcctttttcttcagaaa |
33851760 |
T |
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| Q |
126 |
aatcaacaattgtgataaacacacctttctctgcaagagctagcacaagacctttacctgta |
187 |
Q |
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| T |
33851759 |
aatcaacaattgttataaatacacctttctctgcaagagctagcacaagacctttacctgta |
33851698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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