View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9115_2D_low_32 (Length: 256)

Name: NF9115_2D_low_32
Description: NF9115_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9115_2D_low_32
NF9115_2D_low_32
[»] chr7 (11 HSPs)
chr7 (11-238)||(661056-661283)
chr7 (13-91)||(22088209-22088287)
chr7 (142-179)||(22080390-22080427)
chr7 (128-179)||(20338458-20338509)
chr7 (11-86)||(22080477-22080552)
chr7 (130-180)||(20351628-20351678)
chr7 (142-179)||(22063176-22063213)
chr7 (142-179)||(22069645-22069682)
chr7 (142-175)||(22088131-22088164)
chr7 (47-87)||(15572347-15572387)
chr7 (128-180)||(20126623-20126675)
[»] chr4 (1 HSPs)
chr4 (128-182)||(2910531-2910585)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 661056 - 661283
Alignment:
Q  11 tgaaaattcttacgtttgttgtctccggaaggaagtacaccaccttataaatgtcggttgaactatcataaccaaatttgagattagaatagtgaactag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  661056 tgaaaattcttacgtttgttgtctccggaaggaagtacaccaccttataaatgtcggttgaactatcataaccaaatttgagattagaatagtgaactag 661155  T
Q  111 accgtcaacacgacaagaccctagttttttagatattgtccttgtggccgggttccaaaaacgaagccacatttcgtatccgttggtgaaagaaaaacct 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  661156 accgtcaacacgacaagaccctagttttttagatattgtccttgtggccgggttccaaaaacgaagccacatttggtatccgttggtgaaagaaaaacct 661255  T
Q  211 tgcaaacaaagcaatccattgcaagaac 238  Q
    ||||||||||||||||||||||||||||    
T  661256 tgcaaacaaagcaatccattgcaagaac 661283  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 22088287 - 22088209
Alignment:
Q  13 aaaattcttacgtttgttgtctccggaaggaagtacaccaccttataaatgtcggttgaactatcataaccaaatttga 91  Q
    |||| |||||| ||||||||||| |||  ||| ||||||||||||||| | || |||||| ||||||||||||| ||||    
T  22088287 aaaactcttacatttgttgtctctggagtgaaatacaccaccttataagtttctgttgaattatcataaccaaacttga 22088209  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 22080427 - 22080390
Alignment:
Q  142 gatattgtccttgtggccgggttccaaaaacgaagcca 179  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  22080427 gatattgtccttgtggctgggttccaaaaacgaagcca 22080390  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 20338509 - 20338458
Alignment:
Q  128 accctagttttttagatattgtccttgtggccgggttccaaaaacgaagcca 179  Q
    |||||| ||||  ||||||| |||||||||| ||||||||||||||||||||    
T  20338509 accctaattttgcagatattttccttgtggcagggttccaaaaacgaagcca 20338458  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 22080552 - 22080477
Alignment:
Q  11 tgaaaattcttacgtttgttgtctccggaaggaagtacaccaccttataaatgtcggttgaactatcataaccaaa 86  Q
    |||||| ||||||||||||||| |  |||  ||| ||||||||||||||| | || |||||| |||||||||||||    
T  22080552 tgaaaactcttacgtttgttgtttttggagtgaaatacaccaccttataagtttctgttgaattatcataaccaaa 22080477  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 20351678 - 20351628
Alignment:
Q  130 cctagttttttagatattgtccttgtggccgggttccaaaaacgaagccac 180  Q
    |||||||||| ||||||||||||||||||  |||||||||| |||| ||||    
T  20351678 cctagtttttcagatattgtccttgtggcttggttccaaaagcgaatccac 20351628  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 22063213 - 22063176
Alignment:
Q  142 gatattgtccttgtggccgggttccaaaaacgaagcca 179  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  22063213 gatattatccttgtggctgggttccaaaaacgaagcca 22063176  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 22069682 - 22069645
Alignment:
Q  142 gatattgtccttgtggccgggttccaaaaacgaagcca 179  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  22069682 gatattatccttgtggctgggttccaaaaacgaagcca 22069645  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 175
Target Start/End: Complemental strand, 22088164 - 22088131
Alignment:
Q  142 gatattgtccttgtggccgggttccaaaaacgaa 175  Q
    |||||||||||||||||||||||||||| |||||    
T  22088164 gatattgtccttgtggccgggttccaaacacgaa 22088131  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 15572347 - 15572387
Alignment:
Q  47 acaccaccttataaatgtcggttgaactatcataaccaaat 87  Q
    |||||||||| ||| ||||||||||| ||||||||||||||    
T  15572347 acaccaccttgtaagtgtcggttgaattatcataaccaaat 15572387  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 20126623 - 20126675
Alignment:
Q  128 accctagttttttagatattgtccttgtggccgggttccaaaaacgaagccac 180  Q
    |||||| ||||| |||||||| || |||||| || ||||||||||||||||||    
T  20126623 accctaatttttcagatattgcccatgtggctggattccaaaaacgaagccac 20126675  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 2910585 - 2910531
Alignment:
Q  128 accctagttttttagatattgtccttgtggccgggttccaaaaacgaagccacat 182  Q
    |||||| ||| |||||||||||||||||||| |||||||| ||||| ||||||||    
T  2910585 accctaatttattagatattgtccttgtggcagggttccacaaacggagccacat 2910531  T

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