View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_2D_low_34 (Length: 255)
Name: NF9115_2D_low_34
Description: NF9115_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_2D_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 53788993 - 53789223
Alignment:
| Q |
1 |
ttcttataacatttccgtatctgagtccatcaaaaagacaacg--caattgttgcaatccaactacagacgatggtataagtattttagttatgttgata |
98 |
Q |
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| T |
53788993 |
ttcttataacatttc-gtatctgagtccatcaaaaagacaacgtgcaattgttgcaatccaactacagacgatggtataagtattttagttatgttgata |
53789091 |
T |
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| Q |
99 |
tggaaaagaaaaggagaacttgattagatagaagttgaaaaatga---tgatgaagaagaatgaatgttttttcttcttcattttgcaacagttaccact |
195 |
Q |
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| T |
53789092 |
tggaaaagaaaaggagaacttgattagatagaagttgaaaaatgatattgatgaagaagaattaatgttttttcttcttcattttgcaacagttaccact |
53789191 |
T |
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| Q |
196 |
tttggaaatgttaaggactaaagtaactaaca |
227 |
Q |
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|||| ||||||||||||||||||||||||||| |
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| T |
53789192 |
tttgaaaatgttaaggactaaagtaactaaca |
53789223 |
T |
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