View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_2D_low_38 (Length: 240)
Name: NF9115_2D_low_38
Description: NF9115_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_2D_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 8553708 - 8553491
Alignment:
| Q |
19 |
ttatatataatgatagtatgctacatatatataatgaatttagggtatgtgttaaggttatatatatt-aatgaatgtgaaaattaatgtagttagtttg |
117 |
Q |
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| T |
8553708 |
ttatatataataatagtatgctacatatatataatgaatttagggtatgtgttaaggttatatatatttaatgaatgtgaaaattaatgtagttagtttg |
8553609 |
T |
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| Q |
118 |
tttctgtttttagtcaagagttgttcctaacttgacaagtgtcatgtaggcaacttaattggactgacaatgactaattattagtaataattattgttat |
217 |
Q |
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| T |
8553608 |
tttctgtttttagtcaagagttgttcctaacttgacaagtgtcatgtaggcaacttaattggactgacaatgactgattattagtaataattattgttat |
8553509 |
T |
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| Q |
218 |
gttatttttgatgtccat |
235 |
Q |
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| T |
8553508 |
gttatttttgttgtccat |
8553491 |
T |
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