View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9115_2D_low_39 (Length: 238)

Name: NF9115_2D_low_39
Description: NF9115_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9115_2D_low_39
NF9115_2D_low_39
[»] chr4 (2 HSPs)
chr4 (5-221)||(53247433-53247649)
chr4 (59-221)||(53254923-53255085)


Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 53247433 - 53247649
Alignment:
Q  5 agcatgttgctgattggggatgctagcctgggtatactgccacaaatatggaacaaaccttttttactatgatgcaaaataacaaaagctgatacttttt 104  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53247433 agcatgttgctgactggggatgctagcctgggtatactgccacaaatatggaacaaaccttttttactatgatgcaaaataacaaaagctgatacttttt 53247532  T
Q  105 attttgaaatgctcatcgtctgatgttttatggtgtttggcctaggcaaattagttctctataatgacaccacaaaataaactgcttatagattggtgtt 204  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||    
T  53247533 atttttaaatgctcttcgtccgatgttttatggtgtttggcctaggcaaattagttctctataatgacaccacaatttaaactgcttataaattggtgtt 53247632  T
Q  205 tcttttaggattgatat 221  Q
    |||||||||||||||||    
T  53247633 tcttttaggattgatat 53247649  T

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Target: chr4; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 59 - 221
Target Start/End: Complemental strand, 53255085 - 53254923
Alignment:
Q  59 aaaccttttttactatgatgcaaaataacaaaagctgatactttttattttgaaatgctcatcgtctgatgttttatggtgtttggcctaggcaaattag 158  Q
    |||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  53255085 aaacctgttttactatgattccaaataacaaaagctgatacttttcattttgaaatgctcttcgtcttatgttttatggtgtttggcctaggcaaattag 53254986  T
Q  159 ttctctataatgacaccacaaaataaactgcttatagattggtgtttcttttaggattgatat 221  Q
    |||| ||| |||||| || |||||||||||||  || |||||||||||||||| |||||||||    
T  53254985 ttctttatgatgacagcataaaataaactgctattaaattggtgtttcttttaagattgatat 53254923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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