View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_2D_low_4 (Length: 1026)
Name: NF9115_2D_low_4
Description: NF9115_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_2D_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 594; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 22 - 805
Target Start/End: Complemental strand, 53789015 - 53788240
Alignment:
| Q |
22 |
tcagatacggaaatgttataagaatgtataattgtatatgtaatttattattagctatagcctatagtttgttgcaactagtggtattatgaaatgaatg |
121 |
Q |
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| T |
53789015 |
tcagatacg-aaatgttataagaatgtataattgtatatgtaatttattattagctatag-------tttgttgcgacttgtggtattatgaaatgaatg |
53788924 |
T |
|
| Q |
122 |
agagaagtatattggaataatagaataaaaagaagacgacaatcaaatgacatagtatggtattgatgaatcatacaaaaaggcctagatgtgtgggtgg |
221 |
Q |
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| T |
53788923 |
agagaagtatagtggaataatagaataaaaagaagacgacaatcaaatgacatggtatggtattgatgaatcatacaaaaaggcctagatgtgtgggtgg |
53788824 |
T |
|
| Q |
222 |
agcgaacgtgtaaggagattcaaaagtgttgggtcacgaggaggatgatcctccggactccccatcttgacacaaaggtggtatcttacatcatgattta |
321 |
Q |
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| T |
53788823 |
agcgaacgtgtaaggagattcaaaagtgttgggtcacgaggaggataatcctccggactccccatctttttgcaaaggtggtatcttacatgatgattta |
53788724 |
T |
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| Q |
322 |
ataagaatttgatcggtt-tttgtgttgaaagtctttctatcaatgtgttttgacggcgtgctctgctgaatgtcacaccaacgatgcaagtaagtgtat |
420 |
Q |
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| T |
53788723 |
ataagaatttgatcggttctttgtgttgaaagtctttctatcacagtgttttgatggcgtgctccactgaatgtcacaccaacggtgcaagtaagtgtat |
53788624 |
T |
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| Q |
421 |
gtaaatgaaaaaacttccttgagtgatagcataatgaattgacatacttatatttatacatgagacgaagattgttgtgtagaaagtgtgaattaaaagt |
520 |
Q |
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| T |
53788623 |
gtagatgaaaaaacttccttaagtgggagcataatgaattgacatacttatatttacacatgagaagaagattgttgtgtagaaagtgtgaattaaaagt |
53788524 |
T |
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| Q |
521 |
ttcaccttacttnnnnnnntggggattgaattttataaattataggatccataaaattcaatatcttaaggttttatgttaaagtgtggtgttcgactca |
620 |
Q |
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| T |
53788523 |
ttcacgttacttagaaaaatggggattgaattttataaattataggacccataaa-tccaatatcttaaggttttaggttaaagtgtggtgttggactca |
53788425 |
T |
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| Q |
621 |
cttatattgggatccccggttctcacacttcacatcatagcaaagatagagtgagtgggtaccattactcaccacgttttcttagccaaagttcaactct |
720 |
Q |
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| T |
53788424 |
cttatattgggattcccggttctcacacttcacatcatagcaaagatagagtgagtgggtaccattactcaccacggtttctcagccaaagttcaactct |
53788325 |
T |
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| Q |
721 |
attagtttaagatgatgaatgaaacactgcaatacaaccgagtacttactagcaaataatactaatgtatttccatggatttatg |
805 |
Q |
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| T |
53788324 |
attagtttaagatgatgaatgaaacactgcaatacaaccgagtacttactagcaaataatactaatgtatttccatggatttatg |
53788240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 854 - 1003
Target Start/End: Complemental strand, 53788241 - 53788091
Alignment:
| Q |
854 |
tgtaatggaagagaatgtcaaattgaatcaagatgctggaagtgattaaatattggaaagaaaattattcaaatactcaaataatggaa-cagttgattt |
952 |
Q |
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| T |
53788241 |
tgtaatagaagagaatgttaaattgaatcaagatgctggaagtgattaaatattgggaaaaaaattattgcaatactcaaataatggaaccggttgattt |
53788142 |
T |
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| Q |
953 |
tcccaacaagcatttgcaaatgaatttaacgaagtcctagatagatggaat |
1003 |
Q |
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| T |
53788141 |
tcccaacaagcatttgcaaatgaatttaacgaagtcctggatagatggaat |
53788091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 834 - 899
Target Start/End: Complemental strand, 5273237 - 5273172
Alignment:
| Q |
834 |
gttccacccctgaacgagattgtaatggaagagaatgtcaaattgaatcaagatgctggaagtgat |
899 |
Q |
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| T |
5273237 |
gttccatcccttaatgagattgtaatggaagagaatgtgagaatgaatgaagattctgcaagtgat |
5273172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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