View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_2D_low_41 (Length: 230)
Name: NF9115_2D_low_41
Description: NF9115_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_2D_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 39611067 - 39611277
Alignment:
| Q |
1 |
ctatctgatgcaacaaacttttttgagattcctcttgtccttcctcccctgaaagctccatcagagtcttggcttaagcgcactttgcctaccatttcga |
100 |
Q |
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| T |
39611067 |
ctatctgatgcaacaaacttttttgagattcctcttgtccttcctcccctgaaagctccatcagagtcttggcttaagcgcactttgcctaccatttcga |
39611166 |
T |
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| Q |
101 |
caaagaacacatcttcaaagtctaaaccttgctgcaagtattcattcatgacagcatcactgtgtcccaagcgggaaacaattgttaattcttctaatgt |
200 |
Q |
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| T |
39611167 |
caaagaacacatcttcaaagtctaagccttgctgcaagtattcattcatgacagcgtcactgtgtcccaagcgggaaacaattgttaattcttctaatat |
39611266 |
T |
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| Q |
201 |
gcaacatggtg |
211 |
Q |
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| T |
39611267 |
gcaacatggtg |
39611277 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 31006391 - 31006357
Alignment:
| Q |
52 |
aaagctccatcagagtcttggcttaagcgcacttt |
86 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
31006391 |
aaagctccttcagagtcttggcttaagcgcacttt |
31006357 |
T |
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