View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9115_2D_low_43 (Length: 230)

Name: NF9115_2D_low_43

Description: NF9115_2D

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF9115_2D_low_43

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 161; E-Value: 5e-86

Query Start/End: Original strand, 1 - 161

Target Start/End: Original strand, 31769386 - 31769546

Alignment:

Q	1	gtgctcatttcagggtcttgtcaccaataggggatccacttttgccaaaaatgttatattccaattggtccttattggtgcatacaaaataaatcgtatc	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31769386	gtgctcatttcagggtcttgtcaccaataggggatccacttttgccaaaaatgttatattccaattggtccttattggtgcatacaaaataaatcgtatc	31769485	T

Q	101	aatttgattttctgaaatcttaaatgtttgccaaatatagtcctatatacacaattcaaat	161	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31769486	aatttgattttctgaaatcttaaatgtttgccaaatatagtcctatatacacaattcaaat	31769546	T

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Target: chr3; HSP #2

Raw Score: 51; E-Value: 2e-20

Query Start/End: Original strand, 170 - 220

Target Start/End: Original strand, 31769532 - 31769582

Alignment:

Q	170	atacacaattcaaatcttttttggagtgtgtaggcaattacttgatgatgt	220	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31769532	atacacaattcaaatcttttttggagtgtgtaggcaattacttgatgatgt	31769582	T

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