View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9115_2D_low_57 (Length: 203)

Name: NF9115_2D_low_57
Description: NF9115_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9115_2D_low_57
NF9115_2D_low_57
[»] chr3 (1 HSPs)
chr3 (15-203)||(31769559-31769747)
[»] scaffold0246 (1 HSPs)
scaffold0246 (89-203)||(22237-22351)
[»] chr4 (2 HSPs)
chr4 (89-203)||(40484298-40484412)
chr4 (120-203)||(9690589-9690672)
[»] chr6 (2 HSPs)
chr6 (15-203)||(31706792-31706981)
chr6 (126-176)||(32185855-32185905)
[»] chr5 (2 HSPs)
chr5 (29-203)||(42259355-42259529)
chr5 (92-203)||(40167258-40167369)


Alignment Details
Target: chr3 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 31769747 - 31769559
Alignment:
Q  15 atggacatcttcataggaacctgcttatgccaaactagttctctagttgcatctattgttgaggaaactgaagctgtcagaatctgataagtgtctcgca 114  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||| ||||||    
T  31769747 atggacaccttcataggaaactgcttatgccaaactagttctctagttgcatctattgttgaggaaatcggagctgtcagaatctgataagtgcctcgca 31769648  T
Q  115 cagtgtaaccatcatgaatatctggatctcattgccacctgtcaataatattagcctgcacaggaacatcatcaagtaattgcctacac 203  Q
    |||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31769647 cagtgtaaccatcatgaatatctggatcccattaccgcctgtcaataatattagcctgcacagaaacatcatcaagtaattgcctacac 31769559  T

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Target: scaffold0246 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 89 - 203
Target Start/End: Original strand, 22237 - 22351
Alignment:
Q  89 tgtcagaatctgataagtgtctcgcacagtgtaaccatcatgaatatctggatctcattgccacctgtcaataatattagcctgcacaggaacatcatca 188  Q
    ||||||||||||||| |   |||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||  |||| |||||    
T  22237 tgtcagaatctgatatgcacctcggacagtgtaaccttcatgaatatctggatcccactgccacctgtcaataatattagcctgcacaataacaccatca 22336  T
Q  189 agtaattgcctacac 203  Q
    |||||||||||||||    
T  22337 agtaattgcctacac 22351  T

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Target: chr4 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 89 - 203
Target Start/End: Original strand, 40484298 - 40484412
Alignment:
Q  89 tgtcagaatctgataagtgtctcgcacagtgtaaccatcatgaatatctggatctcattgccacctgtcaataatattagcctgcacaggaacatcatca 188  Q
    ||||||||||||||| |   |||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||  |||| |||||    
T  40484298 tgtcagaatctgatatgcacctcggacagtgtaaccttcatgaatatctggatcccactgccacctgtcaataatattagcctgcacaataacaccatca 40484397  T
Q  189 agtaattgcctacac 203  Q
    |||||||||||||||    
T  40484398 agtaattgcctacac 40484412  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 9690589 - 9690672
Alignment:
Q  120 taaccatcatgaatatctggatctcattgccacctgtcaataatattagcctgcacaggaacatcatcaagtaattgcctacac 203  Q
    |||||||||||| |||| |||||||| ||||||||||||  || ||||| |||||||  ||||  |||||||||  ||||||||    
T  9690589 taaccatcatgagtatccggatctcactgccacctgtcagaaacattagtctgcacacaaacagtatcaagtaaaagcctacac 9690672  T

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Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 31706792 - 31706981
Alignment:
Q  15 atggacatcttcataggaacctgcttatgccaaactagttctctagttgcatctattgttgaggaaactgaagctgtcagaatctgataagtgtctcgca 114  Q
    ||||||| ||||| |||||||||||||||||| || || ||||| ||||  || | |||||| || ||    | ||||||||||||||| |   ||| ||    
T  31706792 atggacaccttcagaggaacctgcttatgccatacaaggtctcttgttgtgtcaactgttgaagagaccagtgttgtcagaatctgataggcacctcaca 31706891  T
Q  115 cagtgtaaccatcatgaatatctggatctcattgcc-acctgtcaataatattagcctgcacaggaacatcatcaagtaattgcctacac 203  Q
    || |||| |||||||| || |||||||| || |||| || |||||||||||||||||||||||  |||| |||||||||||||| |||||    
T  31706892 caatgtacccatcatgcatgtctggatcccactgcccacatgtcaataatattagcctgcacaataacaccatcaagtaattgcatacac 31706981  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 32185855 - 32185905
Alignment:
Q  126 tcatgaatatctggatctcattgccacctgtcaataatattagcctgcaca 176  Q
    |||||||| | |||||| || ||||||||||||| ||||||||||||||||    
T  32185855 tcatgaatgtttggatcccactgccacctgtcaagaatattagcctgcaca 32185905  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 203
Target Start/End: Original strand, 42259355 - 42259529
Alignment:
Q  29 aggaacctgcttatgccaaactagttctctagttgcatctattgttgaggaaactgaagctgtcagaatctgataagtgtctcgcacagtgtaaccatca 128  Q
    ||||||||||||||||||||  || |||||| |||| || |  || || || || | || ||||| ||| |||||||   |||||||||| || || |||    
T  42259355 aggaacctgcttatgccaaatgagatctctaattgcgtcaaaagtggaagagaccggagttgtcataatgtgataagaacctcgcacagtatatccctca 42259454  T
Q  129 tgaatatctggatctcattgccacctgtcaataatattagcctgcacaggaacatcatcaagtaattgcctacac 203  Q
    || || |||||||  || ||||||||||||| ||||||||||||||||   |||  |||||||||| ||||||||    
T  42259455 tgtatgtctggatgccactgccacctgtcaagaatattagcctgcacaaatacactatcaagtaatagcctacac 42259529  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 40167369 - 40167258
Alignment:
Q  92 cagaatctgataagtgtctcgcacagtgtaaccatcatgaatatctggatctcattgccacctgtcaataatattagcctgcacaggaacatcatcaagt 191  Q
    ||||||| ||||||   ||||||| || || |||||||| || |||||||| ||  |||||||||||| ||||||||||||||||   ||| |||||| |    
T  40167369 cagaatccgataagcacctcgcactgtatacccatcatgtatgtctggatcccacagccacctgtcaagaatattagcctgcacaaatacaccatcaaat 40167270  T
Q  192 aattgcctacac 203  Q
    ||| ||||||||    
T  40167269 aatagcctacac 40167258  T

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