View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9115_high_5 (Length: 450)
Name: NF9115_high_5
Description: NF9115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 16 - 437
Target Start/End: Original strand, 1455659 - 1456080
Alignment:
| Q |
16 |
cataaacataataggctatgcttttaatagtgtaaactattgataagaaacagataactgatatgaatttttgtattccttttgagaatacaatatcttc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1455659 |
cataaacataataggctatgcttttaatagtgtaaactattgataagaaacagataactgatatgaatttttgtattccttttgagaatacaatatcttc |
1455758 |
T |
|
| Q |
116 |
agtagagatgaattcccaattatcacggacaagcggtgcaaatactaaggccgaagcgatcaaaatgatgctagcagcagtccatgagaaaaaaccaact |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1455759 |
agtagagatgaattcccaattatcacggacaagcggtgcaaatactatggccgaagcgatcaaaatgatgctagcagcagtccatgagaaaaaaccaact |
1455858 |
T |
|
| Q |
216 |
tctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagattctgttgtcaacaggggggattgaactaatataaagctgccttaatt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1455859 |
tctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagattctgttgtcaacaggggggattgaactaatataaagctgccttaatt |
1455958 |
T |
|
| Q |
316 |
gaataaagaaaacaagagggacgagtatgaccatgatgatattctcatattttgccataaagttacgaccatctgatgatatctttagtatagggaagat |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
1455959 |
gaataaagaaaacaagagggacgagtatgaccatgatgatattctcatattttgccataaagttacgaccatctgatgatatctttagcatagggaagat |
1456058 |
T |
|
| Q |
416 |
agccaatagcaagcatagtatt |
437 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
1456059 |
agccaatagcaagcatagtatt |
1456080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 16 - 437
Target Start/End: Complemental strand, 1567686 - 1567265
Alignment:
| Q |
16 |
cataaacataataggctatgcttttaatagtgtaaactattgataagaaacagataactgatatgaatttttgtattccttttgagaatacaatatcttc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1567686 |
cataaacataataggctatgcttttaatagtgtaaactattgataagaaacagataactgatatgaatttttgtattccttttgagaatacaatatcttc |
1567587 |
T |
|
| Q |
116 |
agtagagatgaattcccaattatcacggacaagcggtgcaaatactaaggccgaagcgatcaaaatgatgctagcagcagtccatgagaaaaaaccaact |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1567586 |
agtagagatgaattcccaattatcacggacaagcggtgcaaatactatggctgaagcgatcaaaatgatgctagcagcagtccatgagaaaaaaccaact |
1567487 |
T |
|
| Q |
216 |
tctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagattctgttgtcaacaggggggattgaactaatataaagctgccttaatt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1567486 |
tctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagattctgttgtcaacaggggggattgaactaatataaagctgccttaatt |
1567387 |
T |
|
| Q |
316 |
gaataaagaaaacaagagggacgagtatgaccatgatgatattctcatattttgccataaagttacgaccatctgatgatatctttagtatagggaagat |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1567386 |
gaataaagaaaacaagagggacgagtatgaccatgatgatattctcatattttgccataaagttacgaccatctgatgatatctttagtatagggaagat |
1567287 |
T |
|
| Q |
416 |
agccaatagcaagcatagtatt |
437 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
1567286 |
agccaatagcaagcatagtatt |
1567265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 16 - 437
Target Start/End: Complemental strand, 1556194 - 1555773
Alignment:
| Q |
16 |
cataaacataataggctatgcttttaatagtgtaaactattgataagaaacagataactgatatgaatttttgtattccttttgagaatacaatatcttc |
115 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
1556194 |
cataaacatagtagactatgcttttaatagtgtaaactattgataagaaacagataactgatacgaatttttgtattccctttgagaatacaatgtcttc |
1556095 |
T |
|
| Q |
116 |
agtagagatgaattcccaattatcacggacaagcggtgcaaatactaaggccgaagcgatcaaaatgatgctagcagcagtccatgagaaaaaaccaact |
215 |
Q |
| |
|
||||||||||| ||||||| ||||| ||||||||| ||||| ||| | ||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1556094 |
agtagagatgacttcccaagtatcatggacaagcgatgcaattaccatggccgaaacgatcaaaatgatgctagcagcggtccatgagaaaaaaccaact |
1555995 |
T |
|
| Q |
216 |
tctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagattctgttgtcaacaggggggattgaactaatataaagctgccttaatt |
315 |
Q |
| |
|
|||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||| |
|
|
| T |
1555994 |
tctacgactgaaattgcatttgatagcaaaattatgaataagatcccaaagattctgttgtcaacagggctcattgaactaatatccgccagccttaatt |
1555895 |
T |
|
| Q |
316 |
gaataaagaaaacaagagggacgagtatgaccatgatgatattctcatattttgccataaagttacgaccatctgatgatatctttagtatagggaagat |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1555894 |
gaataaagaaaacaagagggacgagtatgaccatgatgatattctcatatttcgccataaagttacgaccatctgatgatatctttagtacagggaagat |
1555795 |
T |
|
| Q |
416 |
agccaatagcaagcatagtatt |
437 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
1555794 |
agccaatagcaagcatagtatt |
1555773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 16 - 437
Target Start/End: Original strand, 1460768 - 1461189
Alignment:
| Q |
16 |
cataaacataataggctatgcttttaatagtgtaaactattgataagaaacagataactgatatgaatttttgtattccttttgagaatacaatatcttc |
115 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
1460768 |
cataaacatagtagactatgcttttaatagtgtaaactattgataagaaacagataactgatacgaatttttgtattccctttgagaatacaatgtcttc |
1460867 |
T |
|
| Q |
116 |
agtagagatgaattcccaattatcacggacaagcggtgcaaatactaaggccgaagcgatcaaaatgatgctagcagcagtccatgagaaaaaaccaact |
215 |
Q |
| |
|
||||||||||| ||||||| ||||| ||||||||| ||||| ||| | ||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1460868 |
agtagagatgacttcccaagtatcatggacaagcgatgcaattaccatggccgaaacgatcaaaatgatgctagcagcggtccatgagaaaaaaccaact |
1460967 |
T |
|
| Q |
216 |
tctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagattctgttgtcaacaggggggattgaactaatataaagctgccttaatt |
315 |
Q |
| |
|
|||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||| |
|
|
| T |
1460968 |
tctacgactgaaattgcatttgatagcaaaattatgaataagatcccaaagattctgttgtcaacagggctcattgaactaatatccgccagccttaatt |
1461067 |
T |
|
| Q |
316 |
gaataaagaaaacaagagggacgagtatgaccatgatgatattctcatattttgccataaagttacgaccatctgatgatatctttagtatagggaagat |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1461068 |
gaataaagaaaacaagagggacgagtatgaccatgatgatattctcatatttcgccataaagttacgaccatctgatgatatctttagtacagggaagat |
1461167 |
T |
|
| Q |
416 |
agccaatagcaagcatagtatt |
437 |
Q |
| |
|
|||||||||||| |||| |||| |
|
|
| T |
1461168 |
agccaatagcaaacataatatt |
1461189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 31 - 384
Target Start/End: Original strand, 1454156 - 1454509
Alignment:
| Q |
31 |
ctatgcttttaatagtgtaaactattgataagaaacagataactgatatgaatttttgtattccttttgagaatacaatatcttcagtagagatgaattc |
130 |
Q |
| |
|
||||||||||||||||||||| ||| || | || |||||||| || ||||||| | || ||||||||||||||||||| ||| ||||||||||||| || |
|
|
| T |
1454156 |
ctatgcttttaatagtgtaaagtatggaaatgacacagataattgctatgaatctctgaattccttttgagaatacaacatcctcagtagagatgacttt |
1454255 |
T |
|
| Q |
131 |
ccaattatcacggacaagcggtgcaaatactaaggccgaagcgatcaaaatgatgctagcagcagtccatgagaaaaaaccaacttctatgactgaaatt |
230 |
Q |
| |
|
||| | | | || |||| ||| ||| | | |||| || |||||||| |||||||||| ||||||||||||||| || ||||||||||||||||| | |
|
|
| T |
1454256 |
ccagtgacgaatgagaagctgtggaaacatgatggcccaaaagatcaaaaagatgctagcaacagtccatgagaaaatactaacttctatgactgaaact |
1454355 |
T |
|
| Q |
231 |
gcagttgatagcaaaagtatgaataagatcccaaagattctgttgtcaacaggggggattgaactaatataaagctgccttaattgaataaagaaaacaa |
330 |
Q |
| |
|
||| | ||| || ||| ||||||||||||||||||| | ||||||||||||| | || || | || | ||| ||||||||||| ||| || |
|
|
| T |
1454356 |
gcactaaatatcacaagcatgaataagatcccaaagacgcggttgtcaacagggaaggttatcgcaacagaacacagcccaaattgaataaataaataaa |
1454455 |
T |
|
| Q |
331 |
gagggacgagtatgaccatgatgatattctcatattttgccataaagttacgac |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
1454456 |
gagggacgagtatgaccatgatgatattctcatgttttgccatgaagttacgac |
1454509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 437
Target Start/End: Original strand, 1430084 - 1430167
Alignment:
| Q |
354 |
atattctcatattttgccataaagttacgaccatctgatgatatctttagtatagggaagatagccaatagcaagcatagtatt |
437 |
Q |
| |
|
||||||| |||||||||||| ||||| ||||| ||||| | ||||||| ||||||||||| |||||| ||||||||||||| |
|
|
| T |
1430084 |
atattctgatattttgccatgaagtttgcaccatatgatgttgtctttagggtagggaagataaccaataccaagcatagtatt |
1430167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 2164278 - 2164326
Alignment:
| Q |
228 |
attgcagttgatagcaaaagtatgaataagatcccaaagattctgttgt |
276 |
Q |
| |
|
|||||||||||||||| || ||||||||||| ||||||||| ||||||| |
|
|
| T |
2164278 |
attgcagttgatagcagaattatgaataagaccccaaagatgctgttgt |
2164326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 2162050 - 2162105
Alignment:
| Q |
213 |
acttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagat |
268 |
Q |
| |
|
|||||||| | ||| |||||| ||||||| | |||||||||||||||||||||||| |
|
|
| T |
2162050 |
acttctataaatgatattgcacttgatagaagaagtatgaataagatcccaaagat |
2162105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 187 - 268
Target Start/End: Original strand, 1754131 - 1754212
Alignment:
| Q |
187 |
tagcagcagtccatgagaaaaaaccaacttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagat |
268 |
Q |
| |
|
|||||||| ||||||| | ||||| |||||| ||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
1754131 |
tagcagcaatccatgatacaaaactaacttccatgactgaaattgcacttgatagtccaagtatgaataagatcccaaagat |
1754212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 182 - 284
Target Start/End: Original strand, 1750087 - 1750189
Alignment:
| Q |
182 |
gatgctagcagcagtccatgagaaaaaaccaacttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagattctgttgtcaaca |
281 |
Q |
| |
|
|||| |||||||||||||||| ||| ||| |||||||| || |||| ||||| ||||||| ||||| ||||||||||||||||| ||||| |||| | |
|
|
| T |
1750087 |
gatgatagcagcagtccatgataaataactaacttctacgattgaagttgcacttgatagttcaagtaagaataagatcccaaagacgctgttatcaata |
1750186 |
T |
|
| Q |
282 |
ggg |
284 |
Q |
| |
|
||| |
|
|
| T |
1750187 |
ggg |
1750189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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