View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_low_1 (Length: 705)
Name: NF9115_low_1
Description: NF9115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 10 - 518
Target Start/End: Complemental strand, 30529001 - 30528493
Alignment:
| Q |
10 |
agcagagaaacaaaatcattacacatcaactttgtgctttagtgttaaatcattaaaccctaatccaatccaaatgcagtcttcattcaatactagtatc |
109 |
Q |
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| T |
30529001 |
agcagagaaacaaaatcattacacatcaactttatgctttagtgttaaatcattaaaccctaatccaatccaaatgcagtcttcattcaatactagtatc |
30528902 |
T |
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| Q |
110 |
tcataacggttcattattgactaaattaaattttgcaactaaacacagcaaatttgcaaccatatgtatatagcattatggacccacctaataacacnnn |
209 |
Q |
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| T |
30528901 |
tcataacggttcattattgactaaattaaattttgcaactaaacacagcaaatttgcaaccatatgtatatagcattatggacccacctaataacacttt |
30528802 |
T |
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| Q |
210 |
nnnnnnnnnnnnnnnnnngtaatttcttctaaaaagaattgccctcttgtttgtagttgttggaccctcttctttcctttctctcaggcttttacagaca |
309 |
Q |
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| T |
30528801 |
atttaattttttatttttgtaatttcttctaaaaagaattgccctcttgtttgtagttgttggaccctcttctttcctttctctcaggcttttacagaca |
30528702 |
T |
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| Q |
310 |
actttgttggaaaaaataatgaaatgaagtgaagaatgaggatgaacagtttctgttacaatgttttgaattcttaaatcactctcttttggaaactttc |
409 |
Q |
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| T |
30528701 |
actttgttggaaaaaataatgaaatgaagtgaagaatgaggatgaacagtttctgttacaatgttttgaattcttaaatcactctcttttggaaactttc |
30528602 |
T |
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| Q |
410 |
actcattctttatggtttgaagttgatcaggatctgttttacttgtgtcggttttgagtttcacaaccatgcatataggtatgcaaaatgtaataatcta |
509 |
Q |
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| T |
30528601 |
actcattctttatggtttgaagttgatcaggatctgttttacttgtgtcggttttgagtttcacaaccatgcatataggtatgcaaaatgtaataatcta |
30528502 |
T |
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| Q |
510 |
aagcttatg |
518 |
Q |
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| T |
30528501 |
aagcttatg |
30528493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 591 - 689
Target Start/End: Complemental strand, 30528420 - 30528322
Alignment:
| Q |
591 |
ataggtggatccattcattttcttctatcatttatactaaaaatctgaactttttgttgggctgtttctgggttttctgtggaaaacttgggtgttata |
689 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30528420 |
ataggtggatccattcattttcttctatcatttatactaaaaatttgaactttttgttgggctgtttctgggttttctgtggaaaacttgggtgttata |
30528322 |
T |
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