View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_low_10 (Length: 454)
Name: NF9115_low_10
Description: NF9115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 26483851 - 26484287
Alignment:
| Q |
1 |
atcaaagtgagtgttgaagaaggtgaatccaaaatcacggagcaaacaaagggaaataagaatacaaagttgaaaaatagagaaaattgtgacgatgttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26483851 |
atcaaagtgagtgttgaagaaggtgaatccaaaatcacggagcaaataaagggaaataagaatacaaagttgaaaaatagagaaaattgtgatgatgttg |
26483950 |
T |
|
| Q |
101 |
gttccaaggaaaattcaaaaggttcagagattcaaaatcataagcctgattacattcatgttcgagcacgtcgtggtcaagctactgatagtcatagctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26483951 |
gttccaaggaaaattcaaaaggttcagagattcaaaatcataagcctgattacattcatgttcgagcacgtcgtggtcaagctactgatagtcatagctt |
26484050 |
T |
|
| Q |
201 |
agctgaaagagtgagtacacaattcttatctttcactatttttctcttaatttgtcattatttggttaacaaaatgtgattatcaatacactcataatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26484051 |
agctgaaagagtgagtacacaattcttatctttcactatttttctcttaatttgtcattatttggttaacaaaatgtgattatcaatacactcataatat |
26484150 |
T |
|
| Q |
301 |
gtatgattataaaagttattccaacgatcatgattgattgatagtgtaaaaacattttacatataacaattttttaatatggtttaatgctaaaattacc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26484151 |
gtatgattataaaagttattccaacgatcatgattgattgatagtgtaaaaacattttacatataacaattttttaatatggtttaatgctaaaataacc |
26484250 |
T |
|
| Q |
401 |
gttaataggaggtagaatctgttttaacaatatagat |
437 |
Q |
| |
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| T |
26484251 |
gttaataggaggtagaatctgttttaacaatatagat |
26484287 |
T |
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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 54615828 - 54615899
Alignment:
| Q |
146 |
ctgattacattcatgttcgagcacgtcgtggtcaagctactgatagtcatagcttagctgaaagagtgagta |
217 |
Q |
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||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||| |||| |
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| T |
54615828 |
ctgattacattcatgttcgagcacgtcgtggccaagccaccgacagtcatagcttagctgaaagagtaagta |
54615899 |
T |
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