View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_low_13 (Length: 444)
Name: NF9115_low_13
Description: NF9115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 23 - 398
Target Start/End: Original strand, 6507770 - 6508134
Alignment:
| Q |
23 |
ctccttacaccaagaaacttacctggttcggcttgcttttttctgcctcttttttcgccacaaaccgacgtgtttcgttgaagtaaagataaatttattt |
122 |
Q |
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| T |
6507770 |
ctccttacaccaagaaacttacctggttctgcttgcttttttctgcctcttttttcgccacaaaccgaagtgtttcgttgaagtaaagataaatttattt |
6507869 |
T |
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| Q |
123 |
ggatttgattgtgatgatgatcatgtcctttaagggaagtgtttgaggttctagaggttgacatggttatgaaaatggtgagaaagtgtccaagggaaga |
222 |
Q |
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| T |
6507870 |
ggatttgattgtgatgatgatcatgtcctttaagggaagtgtttgaggttctagaggttgacatggttatgaaaatggtgaga--------aagggaaga |
6507961 |
T |
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| Q |
223 |
agaatatgacaagtgaattgaggagagagcatagaatagaatagaatagaatggaagtagtggcaagtcttttaaagacactgacttgatcattgagtga |
322 |
Q |
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| T |
6507962 |
agaatacgacaagtgaattgaggagagagtagag---agcatagaatagaatggaagtagtggcaagtcttttaaagacactaacttgatcattgagaga |
6508058 |
T |
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| Q |
323 |
aggaaaaggacattatgttaatgtcnnnnnnnnaaatgcaaaaatatattaaatatcaaaccaatcaagagtacaa |
398 |
Q |
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| T |
6508059 |
aggaaaaagacattatgttaatgtcttttttttaaaggcaaaaatatattaaatatcaaaccaatcaagagtacaa |
6508134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 430
Target Start/End: Original strand, 6508153 - 6508187
Alignment:
| Q |
396 |
caaacaacacaaatacaaactctttttagtataat |
430 |
Q |
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| T |
6508153 |
caaacaacacaaatacaaactctttttagtataat |
6508187 |
T |
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