View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_low_15 (Length: 389)
Name: NF9115_low_15
Description: NF9115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 1036352 - 1036086
Alignment:
| Q |
18 |
cagagaagcgcgttgaggtcaccgttgtaggaactaagatcaaggtaggtaacgttggtgaacctttggaatagacgagggaggaaagtgcaagtttgat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1036352 |
cagagaagcgcgttgaggtcaccgttgtaggaactaagatcaaggtaggtaatgttggtgaacctttggaagagacgagggaggaaagtgcaagtttgat |
1036253 |
T |
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| Q |
118 |
agaggatagttagagagaatcgaagagtgtaggtgactgagagaaactgtttggagacggttgagagagatttcaagtagcgaggattgtcattgatcag |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1036252 |
agaggatagttagagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaagtagcgaggattgtcattgatcag |
1036153 |
T |
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| Q |
218 |
aaatgtgaagacatattcccaacaattatcagataaataacaattatttacagctgtcacagttgtg |
284 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1036152 |
aaatgtgaagacatattccgaacaattatcagataaataacaattatttacagctgtcacagttgtg |
1036086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 1036545 - 1036422
Alignment:
| Q |
19 |
agagaagcgcgttgaggtcaccgttgtaggaactaagatcaaggtaggtaacgttggtgaacctttggaatagacgagggaggaaagtgcaagtttgata |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1036545 |
agagaagcgcgttgaggtcaccgttgtaggaactaagatcaaggtaggtaatgttggtgaacctttggaagagacgagggaggaaagtgcaagtttgata |
1036446 |
T |
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| Q |
119 |
gaggatagttagagagaatcgaag |
142 |
Q |
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| T |
1036445 |
gaggatagttagagagaatcgaag |
1036422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 309 - 374
Target Start/End: Complemental strand, 1036052 - 1035987
Alignment:
| Q |
309 |
gtgtttctgaaagcaaccagtttactcaacctcattgttgttcttcttcttcttttactttctgtg |
374 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1036052 |
gtgtttctgaaagcaaccagtttattcaacctcattgttgttcttcttcttcttttactttctgtg |
1035987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 44575222 - 44575173
Alignment:
| Q |
149 |
ggtgactgagagaaactgtttggagacggttgagagagatttcaagtagc |
198 |
Q |
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||||| ||||||||||||||| |||||| | |||||||| |||||||||| |
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| T |
44575222 |
ggtgattgagagaaactgttttgagacgatggagagagacttcaagtagc |
44575173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 55907610 - 55907344
Alignment:
| Q |
18 |
cagagaagcgcgttgaggtcaccgttgtaggaactaagatcaaggtaggtaacgttggtgaacctttggaatagacgagggaggaaagtgcaagtttgat |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
55907610 |
cagagaagtgcgttgaggtcaccgttgtaggaactaagatcaaggtaggtaatgtaggtgaacctttggaagagacgagggaggaaagtgcaagtttgat |
55907511 |
T |
|
| Q |
118 |
agaggatagttagagagaatcgaagagtgtaggtgactgagagaaactgtttggagacggttgagagagatttcaagtagcgaggattgtcattgatcag |
217 |
Q |
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|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
55907510 |
agaggataattagagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaagtagcgaggattgtcgttgatcag |
55907411 |
T |
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| Q |
218 |
aaatgtgaagacatattcccaacaattatcagataaataacaattatttacagctgtcacagttgtg |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55907410 |
aaatgtgaagacatattcccaacaattatcagataaataacaattatttacagctgtcacagttgtg |
55907344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 309 - 374
Target Start/End: Complemental strand, 55907310 - 55907245
Alignment:
| Q |
309 |
gtgtttctgaaagcaaccagtttactcaacctcattgttgttcttcttcttcttttactttctgtg |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
55907310 |
gtgtttctgaaagcaaccagtttactcaacctcattgttgttgttcttcttcttttactttctgtg |
55907245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 41900315 - 41900247
Alignment:
| Q |
129 |
agagagaatcgaagagtgtaggtgactgagagaaactgtttggagacggttgagagagatttcaagtag |
197 |
Q |
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||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41900315 |
agagagaatcgaagagtgttggtgatggagagaaactgtttggagacgagtgagagagatttcaagtag |
41900247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 6403858 - 6403901
Alignment:
| Q |
156 |
gagagaaactgtttggagacggttgagagagatttcaagtagcg |
199 |
Q |
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||||| ||||||||||| |||| ||||||||||||||||||||| |
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| T |
6403858 |
gagaggaactgtttggatacggctgagagagatttcaagtagcg |
6403901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 513493 - 513428
Alignment:
| Q |
129 |
agagagaatcgaagagtgtaggtgactgagagaaactgtttggagacggttgagagagatttcaag |
194 |
Q |
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||||||||||| ||| ||| ||||| ||||| |||||||| ||||||| ||||||||||||||| |
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| T |
513493 |
agagagaatcggagattgttggtgatggagagtaactgttttgagacggcggagagagatttcaag |
513428 |
T |
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