View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_low_18 (Length: 387)
Name: NF9115_low_18
Description: NF9115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 339
Target Start/End: Complemental strand, 26916935 - 26916634
Alignment:
| Q |
17 |
atatgaaggacgtgaagaaataaaataaattggtaatattcaccaacaaacttttatgaaaattcatcttaacgttagaaaccacctcaaaatgcataag |
116 |
Q |
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| T |
26916935 |
atatgaaggacgtgaagaaataaaataaattggtaatattcaccaacaaacttttatgaaaattcatcttaacgttagaaaccacctcaaaat------- |
26916843 |
T |
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| Q |
117 |
gattttcttaatagctctaatttttgcccaacttctcacccatgatgaaaatattattaaccaacccgaaaaccctagnnnnnnntcccaaactcacaaa |
216 |
Q |
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| T |
26916842 |
--------------ctctaatttttgcccaacttctcacccatgatgaaaatattattaaccaacccgaaaacccctagaaaaaatcccaaactcacaaa |
26916757 |
T |
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| Q |
217 |
ttctaaacatagaatgcaaaccttcaagaacgaagaaaaaaggacggacatcatgaccggggttcaaatcccggcacttccacgtgtatgagtttataat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||| |||||||||||||||| |
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| T |
26916756 |
ttctaaacatagaatgcaaaccttcaagaacgaagaaaaaaggacggacatcatgatcggggttcaaatcctgtcacttccacatgtatgagtttataat |
26916657 |
T |
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| Q |
317 |
gattttatcatctcatctatcta |
339 |
Q |
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|||||||||||||| |||||||| |
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| T |
26916656 |
gattttatcatctcgtctatcta |
26916634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Complemental strand, 27845154 - 27845113
Alignment:
| Q |
300 |
gtgtatgagtttataatgattttatcatctcatctatctacc |
341 |
Q |
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|||| ||||||||||||| |||||||||||| |||||||||| |
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| T |
27845154 |
gtgtgtgagtttataatggttttatcatctcgtctatctacc |
27845113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 54086100 - 54086140
Alignment:
| Q |
301 |
tgtatgagtttataatgattttatcatctcatctatctacc |
341 |
Q |
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| T |
54086100 |
tgtatgagtttataatgattttgtcatttcatctatctacc |
54086140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 341
Target Start/End: Complemental strand, 2228157 - 2228079
Alignment:
| Q |
267 |
tcatgaccggggttcaaatcccggcacttccacgtgta----tgagtttataatgattttatcatctcatctatctacc |
341 |
Q |
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| T |
2228157 |
tcatgaccggggttcgaatcccggtacctccacttgtatgtgtgagtttataatgactttgtcatttcgtctatctacc |
2228079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 341
Target Start/End: Original strand, 27856048 - 27856126
Alignment:
| Q |
267 |
tcatgaccggggttcaaatcccggcacttccac----gtgtatgagtttataatgattttatcatctcatctatctacc |
341 |
Q |
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|||||| |||||||| |||||||| |||||||| |||| |||||||||||||| ||| |||| || |||||||||| |
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| T |
27856048 |
tcatgatcggggttcgaatcccggtacttccacttgtgtgtgtgagtttataatgactttttcatttcgtctatctacc |
27856126 |
T |
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