View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_low_19 (Length: 336)
Name: NF9115_low_19
Description: NF9115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 44847782 - 44848099
Alignment:
| Q |
1 |
tttatctgaatcttggaagatgatagtgactgatacctaggatcattatccatgcagatatcaaatgcctatctgaagtttctgcttggacctgatacca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44847782 |
tttatctgaatcttggaagatgatagtgactgatacctaggatcattatccatgcagatatcaaatgcctatctgaagtttctgcttggacctgatacca |
44847881 |
T |
|
| Q |
101 |
aaatgttatttgagtttgtaaaggaaattccaaaacctgagaccccaattagacttgaggtagcttctcttctgagtggtctgttctttacatgggtcgt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44847882 |
aaatgttatttgagtttgtaaaggaaattccaaaacctgagaccccaattagacttgaggtagcttctcttctgagtggtctgttctttacatgggtcgt |
44847981 |
T |
|
| Q |
201 |
cctgctactttttccggtaagtgcagaaatatctgaacaaatatatgagcgagaataggtagctattgaccattttgattttttcaatagctgtgatatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44847982 |
cctgctactttttccggtaagtgcagaaatatctgaacaaatatatgagcgagaataggtagctattgaccattttgattttttcaatagctgtgatatt |
44848081 |
T |
|
| Q |
301 |
ctttcctgtccctgaatc |
318 |
Q |
| |
|
||||||||||| |||||| |
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| T |
44848082 |
ctttcctgtccttgaatc |
44848099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 44896665 - 44896919
Alignment:
| Q |
1 |
tttatctgaatcttggaagatgatagtgactgatacctaggatcattatccatgcagatatcaaatgcctatctgaagtttctgcttggacctgatacca |
100 |
Q |
| |
|
|||||||| || ||||||||| |||| ||||||||||||| |||||||| ||||||||||||||||||||| ||| ||||||||| ||||| || ||||| |
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| T |
44896665 |
tttatctgtatattggaagataatagggactgatacctagcatcattatgcatgcagatatcaaatgcctacctgcagtttctgcgtggacttggtacca |
44896764 |
T |
|
| Q |
101 |
aaatgttatttgagtttgtaaaggaaattccaaaacctgagaccccaattagacttgaggtagcttctcttctgagtggtctgttctttacatgggtcgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||||||| |||| ||||| |||||||||| ||| | | ||||||||||||||||||||| |
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| T |
44896765 |
aaatgttatttgagtttgtaaaggaaatgccaaaatctgagaccccacttaggattgagatagcttctctcctgggcgttctgttctttacatgggtcgt |
44896864 |
T |
|
| Q |
201 |
cctgctactttttccggtaagtgcagaaatatctgaacaaatatatgagcgagaa |
255 |
Q |
| |
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|||| |||||||||||||||||| ||||||||| |||||||||| ||| |||| |
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|
| T |
44896865 |
tctgcaactttttccggtaagtgcgtaaatatctggacaaatatatcagcaagaa |
44896919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 44861399 - 44861702
Alignment:
| Q |
1 |
tttatctgaatcttggaagatgatagtgactgatacctaggatcattatccatgcagatatcaaatgcctatctgaagtttctgcttggacctgatacca |
100 |
Q |
| |
|
||||||||||||| ||||||| | ||||||| ||| |||| |||||| | ||| ||||||||||||||||| || ||||||||| |||||| | ||||| |
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|
| T |
44861399 |
tttatctgaatct-ggaagataacagtgacttatatctagcatcattctgcatacagatatcaaatgcctacttgcagtttctgcgtggacccggtacca |
44861497 |
T |
|
| Q |
101 |
aaatgttatttgagtttgtaaaggaaattccaaaacctgagaccccaattagacttgaggtagcttctcttctgagtggtctgttctttacatgggtcgt |
200 |
Q |
| |
|
|||| |||||||||||||||||||| || ||||||||||||||| | ||||| ||||| |||||||||| ||| | |||||||||||||| |||||||| |
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| T |
44861498 |
aaatattatttgagtttgtaaaggatatgccaaaacctgagaccgtatttagaattgagttagcttctctcctgggcggtctgttctttacttgggtcgt |
44861597 |
T |
|
| Q |
201 |
cctgctactttttccggtaagtgcagaaatatctgaacaaatatatgagcgag-aataggtagctattgacc-attttgattttttcaatagctgtgata |
298 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||| || |||| ||||||| || || ||||||| |||| ||||||| ||||| |
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| T |
44861598 |
cctgcaactttttccggtaagtgcagaaatatctgaacaaatatatcagcaagaaataagtagctaatggccaattttgagttttcaaatagctctgata |
44861697 |
T |
|
| Q |
299 |
ttctt |
303 |
Q |
| |
|
||||| |
|
|
| T |
44861698 |
ttctt |
44861702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 39 - 243
Target Start/End: Original strand, 44835928 - 44836132
Alignment:
| Q |
39 |
aggatcattatccatgcagatatcaaatgcctatctgaagtttctgcttggacctgataccaaaatgttatttgagtttgtaaaggaaattccaaaacct |
138 |
Q |
| |
|
||||||||||| |||||||||||||||||| || ||| |||||||||||||||| |||||||| ||||||||||||||||||||||| || || || |
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| T |
44835928 |
aggatcattatgcatgcagatatcaaatgcttacctgcagtttctgcttggacccagcaccaaaatcttatttgagtttgtaaaggaaatgcctaagtct |
44836027 |
T |
|
| Q |
139 |
gagaccccaattagacttgaggtagcttctcttctgagtggtctgttctttacatgggtcgtcctgctactttttccggtaagtgcagaaatatctgaac |
238 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||| ||| | ||||||||||||||||||| ||||||| ||||||||| ||||||||| |||||||| ||| |
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| T |
44836028 |
gagaccccaattaggattgagatagctactctcctgggcagtctgttctttacatgggttgtcctgcaactttttccagtaagtgcataaatatctcaac |
44836127 |
T |
|
| Q |
239 |
aaata |
243 |
Q |
| |
|
||||| |
|
|
| T |
44836128 |
aaata |
44836132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 44879206 - 44879520
Alignment:
| Q |
1 |
tttatctgaatcttggaagatgatagtgactgatacctaggatcattatccatgcagatatcaaatgcctatctgaagtttctgcttggacctgatacca |
100 |
Q |
| |
|
||||||| || || ||||||| ||||||||||||| |||| |||||| | ||| ||||||||||||||||| ||| ||||||||| |||||| | ||||| |
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|
| T |
44879206 |
tttatcttaagctcggaagataatagtgactgatatctagcatcattctgcatacagatatcaaatgcctacctgcagtttctgcgtggacccggtacca |
44879305 |
T |
|
| Q |
101 |
aaatgttatttgagtttgtaaaggaaattccaaaacctgagaccccaatta-gacttgagg--------tagcttctcttctgagtggtctgttctttac |
191 |
Q |
| |
|
|||| ||||||||||||||||||||| | ||||||| ||| ||| | ||| | | |||| |||||||| | || ||| |||||||||||| |
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|
| T |
44879306 |
aaatcttatttgagtttgtaaaggaactgccaaaacatgataccgtatttacggttggagggtatgacttagcttctatcatgggtgttctgttctttac |
44879405 |
T |
|
| Q |
192 |
atgggtcgtcctgctactttttccggtaagtgc----agaaatatctgaacaaatatatgagcgag-aataggtagct-attgaccattttgattttttc |
285 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||| ||||||||||||||| |||||||| | || |||| |||||| || | | |||||||||||| |
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|
| T |
44879406 |
atgggtcgtcctgcaactttttcctgtaagtgcagaaagaaatatctgaacagatatatgatcaagaaataagtagctaatggtcaattttgatttttca |
44879505 |
T |
|
| Q |
286 |
aatagctgtgatatt |
300 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
44879506 |
aatagctgtgatatt |
44879520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 318
Target Start/End: Original strand, 44896968 - 44897035
Alignment:
| Q |
252 |
agaataggtagctattgacc-attttgattttttcaatagctgtgatattctttcctgtccctgaatc |
318 |
Q |
| |
|
||||||||||||||||| || |||||||||||| ||||||| |||||||||| ||||||||| |||| |
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|
| T |
44896968 |
agaataggtagctattggccgattttgatttttgaaatagctttgatattcttacctgtccctaaatc |
44897035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 24 - 243
Target Start/End: Original strand, 22637715 - 22637934
Alignment:
| Q |
24 |
tagtgactgatacctaggatcattatccatgcagatatcaaatgcctatctgaagtttctgcttggacctgataccaaaatgttatttgagtttgtaaag |
123 |
Q |
| |
|
|||||||||||| |||||||||| || |||||||||||||||||| || || ||||||||| ||| | ||||| || |||||||||||||||||| |
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|
| T |
22637715 |
tagtgactgatatctaggatcatcatgcatgcagatatcaaatgcttacttgcagtttctgcgcggattcggcaccaagatcttatttgagtttgtaaag |
22637814 |
T |
|
| Q |
124 |
gaaattccaaaacctgagaccccaattagacttgaggtagcttctcttctgagtggtctgttctttacatgggtcgtcctgctactttttccggtaagtg |
223 |
Q |
| |
|
||||| || || |||||||||||||||| ||||| || | |||| ||| | ||||||||||||||||||| ||||||| ||||||||||||||||| |
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|
| T |
22637815 |
gaaatgcctaagtctgagaccccaattaggattgagataacaactctcctgggcagtctgttctttacatgggttgtcctgcaactttttccggtaagtg |
22637914 |
T |
|
| Q |
224 |
cagaaatatctgaacaaata |
243 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
22637915 |
cataaatatctgaacaaata |
22637934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 47 - 232
Target Start/End: Complemental strand, 12927927 - 12927742
Alignment:
| Q |
47 |
tatccatgcagatatcaaatgcctatctgaagtttctgcttggacctgataccaaaatgttatttgagtttgtaaaggaaattccaaaacctgagacccc |
146 |
Q |
| |
|
||||| ||||| |||||||| |||| || |||||||| | ||| ||| |||||||||||| |||||||||||||||||||| |||||||| |||||||| |
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|
| T |
12927927 |
tatccttgcaggtatcaaattcctaccttcagtttctgttgggatctggtaccaaaatgttgtttgagtttgtaaaggaaatgccaaaacccgagacccc |
12927828 |
T |
|
| Q |
147 |
aattagacttgaggtagcttctcttctgagtggtctgttctttacatgggtcgtcctgctactttttccggtaagtgcagaaatat |
232 |
Q |
| |
|
| | | |||| || ||||||||| | | ||||| ||||||||||||||| || ||| ||||||||| ||||||||| |||||| |
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|
| T |
12927827 |
attaaagtttgacgtggcttctcttttaggcggtctcttctttacatgggtcatcttgcaactttttcctgtaagtgcataaatat |
12927742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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