View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_low_21 (Length: 335)
Name: NF9115_low_21
Description: NF9115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_low_21 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 13 - 335
Target Start/End: Complemental strand, 4124224 - 4123902
Alignment:
| Q |
13 |
cagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatggtgttattatatggtca |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4124224 |
cagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaaccaaatggtgttattatatggtca |
4124125 |
T |
|
| Q |
113 |
acaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttctggagcaacaatctgggatagtt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4124124 |
acaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttctggagcaacaatctgggatagtt |
4124025 |
T |
|
| Q |
213 |
tcacacacccagcagatgcagctgttccaacaatgagaattgcagctaaccaagtaacaggtaagaaaatatcctttgtatcaagaaaaagtgataatga |
312 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4124024 |
tcacacaccctgcagatgcagctgttccaacaatgagaattgcagctaaccaagtaacaggtaagaaaatatcctttgtatcaagaaaaagtgataatga |
4123925 |
T |
|
| Q |
313 |
tccttcttcaggacattattcag |
335 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
4123924 |
tccttcttcaggacattattcag |
4123902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 13 - 335
Target Start/End: Complemental strand, 4153574 - 4153252
Alignment:
| Q |
13 |
cagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatggtgttattatatggtca |
112 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
4153574 |
cagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaagatggaaattttataatattgaacaaaccaaatggtgttattatatggtca |
4153475 |
T |
|
| Q |
113 |
acaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttctggagcaacaatctgggatagtt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4153474 |
acaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttccggagcaacaatctgggatagtt |
4153375 |
T |
|
| Q |
213 |
tcacacacccagcagatgcagctgttccaacaatgagaattgcagctaaccaagtaacaggtaagaaaatatcctttgtatcaagaaaaagtgataatga |
312 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4153374 |
tcacacaccctgcagatgcagctgttccaacaatgagaattgcagctaaccaagtaacaggtaagaaaatatcctttgtatcaagaaaaagtgataatga |
4153275 |
T |
|
| Q |
313 |
tccttcttcaggacattattcag |
335 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
4153274 |
tccttcttcaggacattattcag |
4153252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 13 - 329
Target Start/End: Complemental strand, 4134769 - 4134453
Alignment:
| Q |
13 |
cagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatggtgttattatatggtca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | || || |||||| |
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| T |
4134769 |
cagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatggtatcatcatttggtca |
4134670 |
T |
|
| Q |
113 |
acaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttctggagcaacaatctgggatagtt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |||| |||| ||||||||| | ||||| |||| |||||||||||||||||||||||||| |
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| T |
4134669 |
acaaacatttcatcttcaacaaattcaacagctaaacttgatgatgcagggaacttgattctaagagacatcaattctggagcaacaatctgggatagtt |
4134570 |
T |
|
| Q |
213 |
tcacacacccagcagatgcagctgttccaacaatgagaattgcagctaaccaagtaacaggtaagaaaatatcctttgtatcaagaaaaagtgataatga |
312 |
Q |
| |
|
|||||||||| |||||| ||||||||||| | |||| ||||||| |||| |||| ||||||||| |||| | |||||| ||||||||||||| ||||| |
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| T |
4134569 |
tcacacaccctgcagattcagctgttccatcgatgaaaattgcatctaataaagttacaggtaagcaaattgcttttgtagcaagaaaaagtgacaatga |
4134470 |
T |
|
| Q |
313 |
tccttcttcaggacatt |
329 |
Q |
| |
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||||||||| ||||||| |
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| T |
4134469 |
tccttcttcgggacatt |
4134453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 329
Target Start/End: Complemental strand, 4145571 - 4145255
Alignment:
| Q |
13 |
cagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatggtgttattatatggtca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||| || || |||||| |
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| T |
4145571 |
cagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaaaatggaaatcttgtaattttgaacaaaccaaatggcagcatcatttggtca |
4145472 |
T |
|
| Q |
113 |
acaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttctggagcaacaatctgggatagtt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |||| |||| ||||||||| | ||||| |||| |||||||||||||||||||||||||| |
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|
| T |
4145471 |
acaaacatttcatcttcaacaaattcaacagctaaacttgatgatgcagggaacttgattctaagagacatcaattctggagcaacaatctgggatagtt |
4145372 |
T |
|
| Q |
213 |
tcacacacccagcagatgcagctgttccaacaatgagaattgcagctaaccaagtaacaggtaagaaaatatcctttgtatcaagaaaaagtgataatga |
312 |
Q |
| |
|
|||||||||| ||||| ||||||||||| | |||| ||||||| ||||| |||| ||||||||| |||| | |||||| ||||||||||||| ||||| |
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| T |
4145371 |
tcacacacccttcagattcagctgttccatcgatgaaaattgcatctaacaaagttacaggtaagcaaattgcttttgtagcaagaaaaagtgacaatga |
4145272 |
T |
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| Q |
313 |
tccttcttcaggacatt |
329 |
Q |
| |
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||||||||| ||||||| |
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| T |
4145271 |
tccttcttcgggacatt |
4145255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 13 - 331
Target Start/End: Complemental strand, 4163933 - 4163609
Alignment:
| Q |
13 |
cagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatggtgttattatatggtca |
112 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| || || |||||| |
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|
| T |
4163933 |
cagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatggtagcatcatttggtca |
4163834 |
T |
|
| Q |
113 |
acaaacatttca--tc----ttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttctggagcaacaatctggg |
206 |
Q |
| |
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|||| ||||||| || ||||| |||||| ||||||||||||| |||| ||||||||||||| | || || |||| |||| || ||||||| |||| |
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| T |
4163833 |
acaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattctagatcaacaatttggg |
4163734 |
T |
|
| Q |
207 |
atagtttcacacacccagcagatgcagctgttccaacaatgagaattgcagctaaccaagtaacaggtaagaaaatatcctttgtatcaagaaaaagtga |
306 |
Q |
| |
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|||||||||| ||||| || ||||| ||||||||||| |||||||||||| |||| ||| ||| || ||||| ||||| |||||||||||||||||||| |
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| T |
4163733 |
atagtttcactcaccctgcggatgccgctgttccaacgatgagaattgcatctaataaagcaacggggaagaatatatcttttgtatcaagaaaaagtga |
4163634 |
T |
|
| Q |
307 |
taatgatccttcttcaggacattat |
331 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
4163633 |
aaatgatccttcttcaggacattat |
4163609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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