View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9115_low_24 (Length: 261)
Name: NF9115_low_24
Description: NF9115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_low_24 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 45678383 - 45678629
Alignment:
| Q |
18 |
aataatagaaacaaaactccatgcaaacgtgacaactgtacattttattttctattttgacaaaactgtccctcttcccagtgaaactcgtatttttgaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45678383 |
aataatagaaacaaaactccatgcaaacgtgacaactgtacattttattttctattttgacaaaactgtccctcttcccagtgaaactcgtatttttgaa |
45678482 |
T |
|
| Q |
118 |
atatatcatcatcacaattatatttggcatttgacaatatatactgtaaatgtttcaaatgatttag---tgttatgctcaagcaagtattactcgttta |
214 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45678483 |
atatatcatcatcaccattatatttggcatttgacaatatatactgtaaatgtttcaaatgatttagtactgttatgctcaagcaagtattactcgttta |
45678582 |
T |
|
| Q |
215 |
gatttgtagccactgtgaccacttaatcaatcaattgcaacatactc |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45678583 |
gatttgtagccactgtgaccacttaatcaatcaattgcaacatactc |
45678629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University