View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_low_3 (Length: 540)
Name: NF9115_low_3
Description: NF9115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_low_3 |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0777 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 16 - 540
Target Start/End: Original strand, 24929796 - 24930319
Alignment:
| Q |
16 |
aaaagaaccgtcagaacatgattctgatacaaagcagaaaaaactaaagagaaaattcacttcagaaagctacgatgaaaagatgaagaaaccattaatc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24929796 |
aaaagaaccgtcagaacatgattctgatacaaagcagaaaaaactaaagagaaaatccacttcagaaagctatgatgaaaagatgaagaaaccattaatc |
24929895 |
T |
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| Q |
116 |
attgatgacgagccagaagaattcaccactggtatgttaattggtgagtcctcaagaagctcatgtggtatatgctttgatttgaaaactgattttgata |
215 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24929896 |
attgatgacgagccagaagaattcaccactggtatgt-aattggtgagtcctcaagaagctcatgtggtatatgctttgatttgaaaactgattttgata |
24929994 |
T |
|
| Q |
216 |
tgttcaaaagaaagagttgcaaccatctcttttgtgttgattgtatttccaaatatgtggattctcaactcaacaataatgtggttaaggtgacttgtcc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24929995 |
tgttcaaaagaaagagttgcaaccatctcttttgtgttgattgtatttccaaatatgtagattctcaactcaacaataatgtggttaaggtgacttgtcc |
24930094 |
T |
|
| Q |
316 |
aactccaaattgttctgcaaaattgttgccaagacatttgcaacatattttgcctaaagaatttatagatcgatgggaattggcaaagtatgagtataaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||| |
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| T |
24930095 |
aactccaaattgttctgcaaaattgttgccaagacatttgcaacatattttgcctaaataatttatagatctatgggaattggcaaagtatgagtctaaa |
24930194 |
T |
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| Q |
416 |
attgcattggagcaaaagacttattgtgcattcaaggattgttctgttttattggtgaatgataatgataggggagaggttttgactagttgcgagtgtc |
515 |
Q |
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| T |
24930195 |
attgcattggagcaaaagacttattgtgcattcaaggattgttctgttttgctggtgaatgataatgataagggagatgttttgactagttgcgagtgtc |
24930294 |
T |
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| Q |
516 |
tgtcttgtcaccggctgttctgtgc |
540 |
Q |
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| T |
24930295 |
cgtcttgtcatcggctgttctgtgc |
24930319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 157 - 528
Target Start/End: Complemental strand, 24976941 - 24976570
Alignment:
| Q |
157 |
tggtgagtcctcaagaagctcatgtggtatatgctttgatttgaaaactgattttgatatgttcaaaagaaagagttgcaaccatctcttttgtgttgat |
256 |
Q |
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|||||| |||||| |||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
24976941 |
tggtgaatcctcacgaagcttatgtggtatatgctttgatttgaaaacagattcagatatgttcaaaagaaagagttgcaaccacctcttttgtgttgaa |
24976842 |
T |
|
| Q |
257 |
tgtatttccaaatatgtggattctcaactcaacaataatgtggttaaggtgacttgtccaactccaaattgttctgcaaaattgttgccaagacatttgc |
356 |
Q |
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||||||||||||||||||| ||||||| | ||||| ||||||||||||||||||||||||||||||||||||| || ||||| ||| ||||||||| |
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| T |
24976841 |
tgtatttccaaatatgtggtttctcaaattaacaacaatgtggttaaggtgacttgtccaactccaaattgttttgtgaaatttgagccgagacatttga |
24976742 |
T |
|
| Q |
357 |
aacatattttgcctaaagaatttatagatcgatgggaattggcaaagtatgagtataaaattgcattggagcaaaagacttattgtgcattcaaggattg |
456 |
Q |
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||||||||||||||| ||||||||| ||| |||||||| | ||| |||||||| ||||||||||||||| ||||||||||||||| |||| ||| |||| |
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| T |
24976741 |
aacatattttgcctagagaatttattgatagatgggaacttgcagtgtatgagtctaaaattgcattggaccaaaagacttattgtccatttaagaattg |
24976642 |
T |
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| Q |
457 |
ttctgttttattggtgaatgataatgataggggagaggttttgactagttgcgagtgtctgtcttgtcaccg |
528 |
Q |
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| T |
24976641 |
ttctgttttgttggttaatgataataataggggtgtggttttgactagttgcgagtgtccatcttgtcaccg |
24976570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 373
Target Start/End: Complemental strand, 21788190 - 21788125
Alignment:
| Q |
308 |
acttgtccaactccaaattgttctgcaaaattgttgccaagacatttgcaacatattttgcctaaa |
373 |
Q |
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|||||||||| |||||||||||||| |||||| ||||| ||| |||||||| ||||| |||||| |
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| T |
21788190 |
acttgtccaagtccaaattgttctgtgaaattgaagccaaaacaattgcaacacattttacctaaa |
21788125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: scaffold0777
Description:
Target: scaffold0777; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 16 - 536
Target Start/End: Complemental strand, 2137 - 1617
Alignment:
| Q |
16 |
aaaagaaccgtcagaacatgattctgatacaaagcagaaaaaactaaagagaaaattcacttcagaaagctacgatgaaaagatgaagaaaccattaatc |
115 |
Q |
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||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2137 |
aaaagaaccgtcagaacatgactctgatgcaaagcagaagaaactaaagagaaaatccacttcagaaagctacgatgaaaagatgaagaaaccattaatc |
2038 |
T |
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| Q |
116 |
attgatgacgagccagaagaattcaccactggtatgttaattggtgagtcctcaagaagctcatgtggtatatgctttgatttgaaaactgattttgata |
215 |
Q |
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|||||||| || |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2037 |
attgatgaggaaccagaagaattcaccactaagatgttaattggtgaatcctcaagaagctcatgtggtatatgctttgatttgaaaactgatttggata |
1938 |
T |
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| Q |
216 |
tgttcaaaagaaagagttgcaaccatctcttttgtgttgattgtatttccaaatatgtggattctcaactcaacaataatgtggttaaggtgacttgtcc |
315 |
Q |
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| T |
1937 |
tgttcaaaagaaagagttgcaaccatctcttttgtgttgattgtatttccaaatatgtggattctcaactcaacaataatgtggttaaggtgacttgtcc |
1838 |
T |
|
| Q |
316 |
aactccaaattgttctgcaaaattgttgccaagacatttgcaacatattttgcctaaagaatttatagatcgatgggaattggcaaagtatgagtataaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||| |
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| T |
1837 |
aactccaaattgttctgcaaaattgttgccaagacatttgcaacatattttgcctaaagaatttatcgatcgatgggagttggcaaagtatgagtctaaa |
1738 |
T |
|
| Q |
416 |
attgcattggagcaaaagacttattgtgcattcaaggattgttctgttttattggtgaatgataatgataggggagaggttttgactagttgcgagtgtc |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1737 |
attgcattggagcaaaagacttattgtgcattcaaggattgttctgttttgctggtgaatgataatgataggggagaggttttgactagttgcgagtgtc |
1638 |
T |
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| Q |
516 |
tgtcttgtcaccggctgttct |
536 |
Q |
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||||||||||||||| |||| |
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| T |
1637 |
cgtcttgtcaccggctattct |
1617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 478
Target Start/End: Original strand, 736027 - 736071
Alignment:
| Q |
434 |
acttattgtgcattcaaggattgttctgttttattggtgaatgat |
478 |
Q |
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||||||||| |||||||| ||||||| ||||| |||||||||||| |
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| T |
736027 |
acttattgtccattcaagaattgttcggttttgttggtgaatgat |
736071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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