View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_low_31 (Length: 239)
Name: NF9115_low_31
Description: NF9115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_low_31 |
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| [»] scaffold0003 (1 HSPs) |
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| [»] scaffold0231 (1 HSPs) |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 24027950 - 24027730
Alignment:
| Q |
1 |
ttcagtctccatggcctttcaaattgtgtcgaagacaattcccaattgttgtttcatactcaatgacaatcaacaaatcacaaggtcaaagtcttgattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24027950 |
ttcagtctccatggcctttcaaattgtgtcgaagacaattcccaattgttgtttcatactcaatgacaatcaacaaatcacaaggtcaaagtcttgattg |
24027851 |
T |
|
| Q |
101 |
ggttggtttatatttaccaaaagatgtttttagtcatgaccaaatttatgttgcactttctagagtaacaagcaagaaaggtataaaaatcctggcacat |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24027850 |
ggttggtttatatttaccaaaagatgtttttaatcatggccaaatttatgttgcactttctagagtaacaagcaagaaaggtataaaaatcctggtacat |
24027751 |
T |
|
| Q |
201 |
gatgaaaacaaggtggcaaaa |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
24027750 |
gatgaaaacaaggtggcaaaa |
24027730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 41860282 - 41860339
Alignment:
| Q |
31 |
gaagacaattcccaattgttgtttcatactcaatgacaatcaacaaatcacaaggtca |
88 |
Q |
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|||||||||||||||||||||| ||||| | ||||||||||||||||| |||||||| |
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| T |
41860282 |
gaagacaattcccaattgttgtctcatatgctatgacaatcaacaaatctcaaggtca |
41860339 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 41888183 - 41888240
Alignment:
| Q |
31 |
gaagacaattcccaattgttgtttcatactcaatgacaatcaacaaatcacaaggtca |
88 |
Q |
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|||||||||||||||||||||| ||||| | ||||||||||||||||| |||||||| |
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|
| T |
41888183 |
gaagacaattcccaattgttgtctcatatgctatgacaatcaacaaatctcaaggtca |
41888240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 41879153 - 41879210
Alignment:
| Q |
31 |
gaagacaattcccaattgttgtttcatactcaatgacaatcaacaaatcacaaggtca |
88 |
Q |
| |
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|||||||||||||||||||| | ||||| | ||||||||||||||||| |||||||| |
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| T |
41879153 |
gaagacaattcccaattgttttctcatatgctatgacaatcaacaaatctcaaggtca |
41879210 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 6 - 211
Target Start/End: Complemental strand, 149249 - 149044
Alignment:
| Q |
6 |
tctccatggcctttcaaattgtgtcgaagacaattcccaattgttgtttcatactcaatgacaatcaacaaatcacaaggtcaaagtcttgattgggttg |
105 |
Q |
| |
|
||||||||||| |||||||| | | | ||||| |||||||| |||| ||||| |||||||||| |||||||| ||||| || |||||||||||||| |
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| T |
149249 |
tctccatggccattcaaattatctaggagacagttcccaataattgtgtcatatgcaatgacaattaacaaatctcaagggcagtctcttgattgggttg |
149150 |
T |
|
| Q |
106 |
gtttatatttaccaaaagatgtttttagtcatgaccaaatttatgttgcactttctagagtaacaagcaagaaaggtataaaaatcctggcacatgatga |
205 |
Q |
| |
|
|| |||||||||||| |||||| |||||||||| |||||||||||||| | || || ||||||||||| |||||||| ||||| || ||||||||| |
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| T |
149149 |
gtctatatttaccaagagatgtatttagtcatggtcaaatttatgttgccatatcaagggtaacaagcaaaaaaggtatcaaaattttgatacatgatga |
149050 |
T |
|
| Q |
206 |
aaacaa |
211 |
Q |
| |
|
|||||| |
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|
| T |
149049 |
aaacaa |
149044 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 22060984 - 22060899
Alignment:
| Q |
3 |
cagtctccatggcctttcaaattgtgtcgaagacaattcccaattgttgtttcatactcaatgacaatcaacaaatcacaaggtca |
88 |
Q |
| |
|
||||||||||||||||| |||||| | | || ||||| || ||| ||||||| || ||||||| || ||||||||||||||||| |
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| T |
22060984 |
cagtctccatggccttttaaattgattaggaggcaatttcccattattgtttcctatgcaatgaccattaacaaatcacaaggtca |
22060899 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 175
Target Start/End: Complemental strand, 22070034 - 22069865
Alignment:
| Q |
6 |
tctccatggcctttcaaattgtgtcgaagacaattcccaattgttgtttcatactcaatgacaatcaacaaatcacaaggtcaaagtcttgattgggttg |
105 |
Q |
| |
|
||||||||||| |||||||| | | | |||||||| || |||||| ||| || | |||||| ||||| ||||||||||||||| |||||||||||||| |
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| T |
22070034 |
tctccatggccattcaaattatctaggagacaatttcctattgtttgttcttattaaatgactatcaataaatcacaaggtcaatctcttgattgggttg |
22069935 |
T |
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| Q |
106 |
gtttatatttaccaaaagatgtttttagtcatgaccaaatttatgttgcactttctagagtaacaagcaa |
175 |
Q |
| |
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| | |||||||| |||||||| |||||||||| ||||| ||||||||| | || ||||| |||||||| |
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| T |
22069934 |
gactttatttacctaaagatgtatttagtcatgggcaaatatatgttgcaatctcaagagtcacaagcaa |
22069865 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 184
Target Start/End: Complemental strand, 122533 - 122382
Alignment:
| Q |
32 |
aagacaattcccaattgttgtttcatactcaatgacaatcaacaaatcacaaggtcaaagtcttgattgggttggtttatatttaccaaaagatgttttt |
131 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||||||||||||||||| | | |||| ||||| | ||||| ||| |||| |||| |
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| T |
122533 |
aagacaattttcaattgttgtctcatactcaatgacaatcaacaaatcacaaggtcgatccttagattatgttggcctctatttggcaagagat-atttt |
122435 |
T |
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| Q |
132 |
agtcatgaccaaatttatgttgcactttctagagtaacaagcaagaaaggtat |
184 |
Q |
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|| |||| ||||||||||||||||||||||| || || ||||| |||||||| |
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| T |
122434 |
agccatggacaaatttatgttgcactttctagggtgactagcaaaaaaggtat |
122382 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 22322502 - 22322579
Alignment:
| Q |
61 |
caatgacaatcaacaaatcacaaggtcaaagtcttgattgggttggtttatatttaccaaaagatgtttttagtcatg |
138 |
Q |
| |
|
||||||||||||| |||||||||||||| | | ||| || ||||||||||| |||||||||||||||||||||| |
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|
| T |
22322502 |
caatgacaatcaataaatcacaaggtcagtctttggatcatgtaggtttatatttgccaaaagatgtttttagtcatg |
22322579 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0231 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0231
Description:
Target: scaffold0231; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 9560 - 9593
Alignment:
| Q |
105 |
ggtttatatttaccaaaagatgtttttagtcatg |
138 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
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|
| T |
9560 |
ggtttatatttgccaaaagatgtttttagtcatg |
9593 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 114101 - 114016
Alignment:
| Q |
3 |
cagtctccatggcctttcaaattgtgtcgaagacaattcccaattgttgtttcatactcaatgacaatcaacaaatcacaaggtca |
88 |
Q |
| |
|
||||||||||||||||| |||||| | | |||||||| || ||| ||||||| || ||||||| || ||||| ||||||||||| |
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|
| T |
114101 |
cagtctccatggccttttaaattgattaggagacaatttcctattattgtttcttatgcaatgaccattaacaagtcacaaggtca |
114016 |
T |
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