View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_low_32 (Length: 227)
Name: NF9115_low_32
Description: NF9115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_low_32 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 3348088 - 3347856
Alignment:
| Q |
1 |
acaaatacatattttcttttaaattatattttcatatttttagaatactatgtaataactaacaaaaatactactgaaggtaaagttgttgactgtgaag |
100 |
Q |
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| T |
3348088 |
acaaatacatattttcttttaaattatattttcatatttttagaatactatgtaataactaacaaaaatactactcaaggtaaagttgttgactgtgaag |
3347989 |
T |
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| Q |
101 |
aggtctcgaaaaatatttgaatttaataatgtggatgtttaaattgtattgtctatggtagttgtatttg------tttaatgatatttacaatttcatt |
194 |
Q |
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| T |
3347988 |
aggtctcgaaaaatatttgaatttaataatgtggatgtttaaattttattgtctatcgtagttgtatttgtaagtttttaatgatatttacaacttgatt |
3347889 |
T |
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| Q |
195 |
tacattttagagatgatttcttggtaagaaaaa |
227 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
3347888 |
tacattttagagatgatttcttggtaagaaaaa |
3347856 |
T |
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