View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9115_low_33 (Length: 223)

Name: NF9115_low_33
Description: NF9115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9115_low_33
NF9115_low_33
[»] chr8 (5 HSPs)
chr8 (1-223)||(4123640-4123862)
chr8 (1-223)||(4163343-4163565)
chr8 (1-218)||(4152990-4153207)
chr8 (1-218)||(4134185-4134402)
chr8 (1-218)||(4144987-4145204)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4123640 - 4123862
Alignment:
Q  1 tcctttttattcatatactcaaccaacttaagtgttccatgtggtgtcaatgacagaattccaaacatagttttgtcggcgaaattgtaagtaatataag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4123640 tcctttttattcatatactcaaccaacttaagtgttccatgtggtgtcaatgacagaattccaaacatagttttgtcggcgaaattgtaagtaatataag 4123739  T
Q  101 tagttccatcattgtcttgaacaaaatgccaaccgtgtaaatacttggttaacatactcggtgttccgagaaaaaccaatccattccatggaccagttct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4123740 tagttccatcattgtcttgaacaaaatgccaaccgtgtaaatacttggttaacatactcggtgttccgagaaaaaccaatccattccatggaccagttct 4123839  T
Q  201 ccaatgaattttcttatcatacc 223  Q
    |||||||||||||||||||||||    
T  4123840 ccaatgaattttcttatcatacc 4123862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4163343 - 4163565
Alignment:
Q  1 tcctttttattcatatactcaaccaacttaagtgttccatgtggtgtcaatgacagaattccaaacatagttttgtcggcgaaattgtaagtaatataag 100  Q
    ||||| ||||||| | |||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||| |||||||||  ||||| | |||||    
T  4163343 tccttattattcaaaaactcaaccaacttaagtgttccatttggtgtcaatgagagaattccaaacatagctttgacggcgaaatcataagttagataag 4163442  T
Q  101 tagttccatcattgtcttgaacaaaatgccaaccgtgtaaatacttggttaacatactcggtgttccgagaaaaaccaatccattccatggaccagttct 200  Q
    |||||||||| ||||||||| ||||| ||||||||  |||||||| ||||||||| ||||||| |||||||||||||  |||||||||||||||||||||    
T  4163443 tagttccatctttgtcttgatcaaaacgccaaccggctaaatactcggttaacattctcggtgatccgagaaaaaccgttccattccatggaccagttct 4163542  T
Q  201 ccaatgaattttcttatcatacc 223  Q
    |||||||||| ||||||||||||    
T  4163543 ccaatgaattctcttatcatacc 4163565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 4152990 - 4153207
Alignment:
Q  1 tcctttttattcatatactcaaccaacttaagtgttccatgtggtgtcaatgacagaattccaaacatagttttgtcggcgaaattgtaagtaatataag 100  Q
    |||||||||||||||||||||| |||||| ||||||||||| ||||||||||| |||||||| ||||||||||| || || |||||||||||||||||||    
T  4152990 tcctttttattcatatactcaatcaacttgagtgttccatgcggtgtcaatgagagaattccgaacatagttttatcagcaaaattgtaagtaatataag 4153089  T
Q  101 tagttccatcattgtcttgaacaaaatgccaaccgtgtaaatacttggttaacatactcggtgttccgagaaaaaccaatccattccatggaccagttct 200  Q
    ||||||||||| |||||||| ||||| ||||||||  |||||||| ||||||||| ||||||| |||||||||||||  ||||||||||||||| |||||    
T  4153090 tagttccatcagtgtcttgatcaaaacgccaaccggctaaatactcggttaacattctcggtgatccgagaaaaacccttccattccatggacctgttct 4153189  T
Q  201 ccaatgaattttcttatc 218  Q
    ||||||||| || |||||    
T  4153190 ccaatgaatatttttatc 4153207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 4134185 - 4134402
Alignment:
Q  1 tcctttttattcatatactcaaccaacttaagtgttccatgtggtgtcaatgacagaattccaaacatagttttgtcggcgaaattgtaagtaatataag 100  Q
    |||||||||||| ||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| |||    
T  4134185 tcctttttattcttatactcaatcaacttaagtgtcccatgtggtgtcaatgagagaattccaaacatagttttgtcggcgaaattataagttataaaag 4134284  T
Q  101 tagttccatcattgtcttgaacaaaatgccaaccgtgtaaatacttggttaacatactcggtgttccgagaaaaaccaatccattccatggaccagttct 200  Q
    | |||||||||| |||   | | ||| |||||||   || ||| | |||| |||  || || |||||||||||||||  |||||||||||||||||||||    
T  4134285 tggttccatcatcgtcgacacctaaacgccaaccaaatagatattcggttgacaatcttggcgttccgagaaaaacccttccattccatggaccagttct 4134384  T
Q  201 ccaatgaattttcttatc 218  Q
    ||||| |||||| |||||    
T  4134385 ccaataaatttttttatc 4134402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 4144987 - 4145204
Alignment:
Q  1 tcctttttattcatatactcaaccaacttaagtgttccatgtggtgtcaatgacagaattccaaacatagttttgtcggcgaaattgtaagtaatataag 100  Q
    |||||||||||| ||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| |||    
T  4144987 tcctttttattcttatactcaatcaacttaagtgtcccatgtggtgtcaatgagagaattccaaacatagttttgtcggcgaaattataagttataaaag 4145086  T
Q  101 tagttccatcattgtcttgaacaaaatgccaaccgtgtaaatacttggttaacatactcggtgttccgagaaaaaccaatccattccatggaccagttct 200  Q
    | |||||||||| |||   | | ||| |||||||   || ||| | |||| |||  || || ||||||||||||||   |||||||||||||||||||||    
T  4145087 tggttccatcatcgtcgacacctaaacgccaaccaaatagatattcggttgacaatcttggcgttccgagaaaaactcttccattccatggaccagttct 4145186  T
Q  201 ccaatgaattttcttatc 218  Q
    ||||| |||||| |||||    
T  4145187 ccaataaatttttttatc 4145204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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