View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9115_low_35 (Length: 203)

Name: NF9115_low_35
Description: NF9115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9115_low_35
NF9115_low_35
[»] chr3 (19 HSPs)
chr3 (19-191)||(13332285-13332457)
chr3 (19-191)||(13160361-13160533)
chr3 (19-191)||(13170412-13170584)
chr3 (19-191)||(13289046-13289218)
chr3 (25-191)||(13343470-13343636)
chr3 (27-182)||(10434568-10434723)
chr3 (26-182)||(10364321-10364477)
chr3 (27-178)||(10376369-10376520)
chr3 (30-178)||(10195067-10195215)
chr3 (30-178)||(10088184-10088332)
chr3 (27-178)||(10579995-10580146)
chr3 (96-178)||(9838255-9838337)
chr3 (96-178)||(9849133-9849215)
chr3 (109-182)||(10505175-10505248)
chr3 (30-147)||(11768659-11768776)
chr3 (27-128)||(10526803-10526904)
chr3 (27-107)||(11782503-11782583)
chr3 (92-163)||(10076675-10076746)
chr3 (27-128)||(10541418-10541519)
[»] scaffold0002 (2 HSPs)
scaffold0002 (19-191)||(146455-146627)
scaffold0002 (19-191)||(136404-136576)
[»] scaffold0083 (1 HSPs)
scaffold0083 (30-182)||(50332-50484)
[»] chr2 (1 HSPs)
chr2 (27-179)||(26906290-26906442)
[»] chr8 (1 HSPs)
chr8 (98-182)||(44958273-44958357)


Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 13332457 - 13332285
Alignment:
Q  19 gcttcagttctgcatcatccagcaccgcctgaagagcgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgtttctgatgtaatc 118  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13332457 gcttctgttctgcatcatccagcaccgcctgaagagcgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgtttctgatgtaatc 13332358  T
Q  119 acaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagaaagaaaagctcctaccaccaaa 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||    
T  13332357 acaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagagaaaagcccctcccaccaaa 13332285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 13160533 - 13160361
Alignment:
Q  19 gcttcagttctgcatcatccagcaccgcctgaagagcgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgtttctgatgtaatc 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13160533 gcttcagttctgcatcatccagcaccacctgaagagcgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgtttctgatgtaatc 13160434  T
Q  119 acaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagaaagaaaagctcctaccaccaaa 191  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||| ||||||||    
T  13160433 acaaaactcttgtgaagcaagtttcgcaactaaagtctgaacagtagcagagagaaaagcccctcccaccaaa 13160361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 13170584 - 13170412
Alignment:
Q  19 gcttcagttctgcatcatccagcaccgcctgaagagcgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgtttctgatgtaatc 118  Q
    ||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13170584 gcttctgttctgcatcatcaagaaccgcctgaagagcgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgtttctgatgtaatc 13170485  T
Q  119 acaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagaaagaaaagctcctaccaccaaa 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||    
T  13170484 acaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagagaaaagcccctcccaccaaa 13170412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 13289218 - 13289046
Alignment:
Q  19 gcttcagttctgcatcatccagcaccgcctgaagagcgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgtttctgatgtaatc 118  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  13289218 gcttcagttctgcatcatccagcaccacctgaagagcgagtagtgttgtttccaactctgccaagagtgaggaattcagcttgttgtttctgatgtaatc 13289119  T
Q  119 acaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagaaagaaaagctcctaccaccaaa 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  13289118 acaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagagaaaagctcctcccaccaaa 13289046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 25 - 191
Target Start/End: Complemental strand, 13343636 - 13343470
Alignment:
Q  25 gttctgcatcatccagcaccgcctgaagagcgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgtttctgatgtaatcacaaaa 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||    
T  13343636 gttctgcatcatccagcaccgcctgaagagcgagcagtgttgtttccaactctgcaaacagcgaggaattcagcttggtgtttcttatgtaatcacaaaa 13343537  T
Q  125 ctcttgtgaagcaagtttctcaactaaagtctgaacagtagcagaaagaaaagctcctaccaccaaa 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||    
T  13343536 ctcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagagaaaagcccctcccaccaaa 13343470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 27 - 182
Target Start/End: Original strand, 10434568 - 10434723
Alignment:
Q  27 tctgcatcatccagcaccgcctgaagagcgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgtttctgatgtaatcacaaaact 126  Q
    |||||||||||||||||  | ||||||| ||| |||||||||| || ||    ||| ||||||  ||| |||||||||||| |||||||||||| |||||    
T  10434568 tctgcatcatccagcacaacttgaagagtgagaagtgttgttttcagctgcctcaagagtgagtcattgagcttggtgtttttgatgtaatcacgaaact 10434667  T
Q  127 cttgtgaagcaagtttctcaactaaagtctgaacagtagcagaaagaaaagctcct 182  Q
    ||| ||||||||||||||||||||| || |||||||| ||||| ||||||||||||    
T  10434668 cttttgaagcaagtttctcaactaaggtttgaacagttgcagagagaaaagctcct 10434723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 26 - 182
Target Start/End: Original strand, 10364321 - 10364477
Alignment:
Q  26 ttctgcatcatccagcaccgcctgaagagcgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgtttctgatgtaatcacaaaac 125  Q
    |||||| |||||||||||  | ||||||| ||||||||||||||  ||||    ||| ||||||  ||| || ||||||||| |||||||||||  ||||    
T  10364321 ttctgcgtcatccagcacaacttgaagagtgagcagtgttgtttgtaactgcctcaagagtgagtcattgagtttggtgtttttgatgtaatcaagaaac 10364420  T
Q  126 tcttgtgaagcaagtttctcaactaaagtctgaacagtagcagaaagaaaagctcct 182  Q
    |||  ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  10364421 tctgttgaagcaagtttctcaactaaggtctgaacagttgcagagagaaaagctcct 10364477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 10376369 - 10376520
Alignment:
Q  27 tctgcatcatccagcaccgcctgaagagcgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgtttctgatgtaatcacaaaact 126  Q
    |||||||||||||||||  | ||||||| ||||||||||||||  ||||    ||| ||||||  ||| || ||||||||| |||||||||||  |||||    
T  10376369 tctgcatcatccagcacaacttgaagagtgagcagtgttgtttttaactgcctcaagagtgagacattgagtttggtgtttttgatgtaatcaagaaact 10376468  T
Q  127 cttgtgaagcaagtttctcaactaaagtctgaacagtagcagaaagaaaagc 178  Q
    ||  ||||||||||||||||||||| ||||||||||| ||||| ||||||||    
T  10376469 ctgttgaagcaagtttctcaactaaggtctgaacagttgcagagagaaaagc 10376520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 30 - 178
Target Start/End: Complemental strand, 10195215 - 10195067
Alignment:
Q  30 gcatcatccagcaccgcctgaagagcgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgtttctgatgtaatcacaaaactctt 129  Q
    ||||||||||||||  | ||||||| |||||||||||||| || ||    ||| ||||||  ||||| |||||||||| |||||||||||| |||||||     
T  10195215 gcatcatccagcacaacttgaagagtgagcagtgttgttttcagctgcctcaagagtgagacattcaacttggtgtttttgatgtaatcacgaaactctg 10195116  T
Q  130 gtgaagcaagtttctcaactaaagtctgaacagtagcagaaagaaaagc 178  Q
     |||||||||||||||||| || ||||||| ||| ||||| ||||||||    
T  10195115 ttgaagcaagtttctcaaccaaggtctgaatagttgcagagagaaaagc 10195067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 30 - 178
Target Start/End: Complemental strand, 10088332 - 10088184
Alignment:
Q  30 gcatcatccagcaccgcctgaagagcgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgtttctgatgtaatcacaaaactctt 129  Q
    ||||||||||||||  | ||||||| |||||||||||||| || ||    | | ||||||  ||||| |||||||||| |||||||||||| |||||||     
T  10088332 gcatcatccagcacaacttgaagagtgagcagtgttgttttcagctgcctcgagagtgagacattcaacttggtgtttttgatgtaatcacgaaactctg 10088233  T
Q  130 gtgaagcaagtttctcaactaaagtctgaacagtagcagaaagaaaagc 178  Q
     |||||||||||||||||| || ||||||| ||| ||||| ||||||||    
T  10088232 ttgaagcaagtttctcaaccaaggtctgaatagttgcagagagaaaagc 10088184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 178
Target Start/End: Complemental strand, 10580146 - 10579995
Alignment:
Q  27 tctgcatcatccagcaccgcctgaagagcgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgtttctgatgtaatcacaaaact 126  Q
    |||||||||||||||||  | ||||||| ||||||||||||||  | ||    ||| ||||||  ||| ||||| |||||| |||||||||||  |||||    
T  10580146 tctgcatcatccagcacaacttgaagagtgagcagtgttgttttaagctgcctcaagagtgagacattgagcttagtgtttttgatgtaatcaagaaact 10580047  T
Q  127 cttgtgaagcaagtttctcaactaaagtctgaacagtagcagaaagaaaagc 178  Q
    |   ||||||||||||||||||||| ||||||||||| ||||| || |||||    
T  10580046 cagttgaagcaagtttctcaactaaggtctgaacagttgcagagaggaaagc 10579995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 96 - 178
Target Start/End: Complemental strand, 9838337 - 9838255
Alignment:
Q  96 agcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagaaagaaaagc 178  Q
    ||||| |||||| |||||||||||| ||||||   ||||||||||||||||||||| ||||||||||| ||||| ||||||||    
T  9838337 agcttagtgtttttgatgtaatcacgaaactcagttgaagcaagtttctcaactaaggtctgaacagttgcagagagaaaagc 9838255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 96 - 178
Target Start/End: Complemental strand, 9849215 - 9849133
Alignment:
Q  96 agcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagaaagaaaagc 178  Q
    ||||| |||||| |||||||||||| ||||||   ||||||||||||||||||||| ||||||||||| ||||| ||||||||    
T  9849215 agcttagtgtttttgatgtaatcacgaaactcagttgaagcaagtttctcaactaaggtctgaacagttgcagagagaaaagc 9849133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 10505248 - 10505175
Alignment:
Q  109 tgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagaaagaaaagctcct 182  Q
    |||||||||||| |||||||  |||||||||||| |||||||| ||||||||||| ||||| ||||||| ||||    
T  10505248 tgatgtaatcacgaaactctgttgaagcaagtttgtcaactaaggtctgaacagttgcagagagaaaagttcct 10505175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 147
Target Start/End: Complemental strand, 11768776 - 11768659
Alignment:
Q  30 gcatcatccagcaccgcctgaagagcgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgtttctgatgtaatcacaaaactctt 129  Q
    ||||||||||| || |||||||| | |||||| |||||||  || |    ||| ||||||  |||||||||||||||| |||||||||||  |||||||     
T  11768776 gcatcatccagtacagcctgaagtgtgagcagggttgtttttaattgcctcaagagtgagacattcagcttggtgtttttgatgtaatcaagaaactctg 11768677  T
Q  130 gtgaagcaagtttctcaa 147  Q
     |||||||||||||||||    
T  11768676 ttgaagcaagtttctcaa 11768659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 128
Target Start/End: Complemental strand, 10526904 - 10526803
Alignment:
Q  27 tctgcatcatccagcaccgcctgaagagcgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgtttctgatgtaatcacaaaact 126  Q
    ||||||||| ||||||| || |||||||| | || |||||||| ||| ||||||| | ||||| |||| | | |||||||||||||| || ||| |||||    
T  10526904 tctgcatcaaccagcacagcttgaagagcaaacaatgttgttttcaattctgccagcggtgagtaattgaacctggtgtttctgatgaaaccacgaaact 10526805  T
Q  127 ct 128  Q
    ||    
T  10526804 ct 10526803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 11782503 - 11782583
Alignment:
Q  27 tctgcatcatccagcaccgcctgaagagcgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgttt 107  Q
    ||||||||| ||||||| || |||||||| | ||||||||||| |||||||||||   ||||| |||| ||||| ||||||    
T  11782503 tctgcatcaaccagcacagcttgaagagcaaacagtgttgttttcaactctgccagttgtgagtaattgagctttgtgttt 11782583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 92 - 163
Target Start/End: Complemental strand, 10076746 - 10076675
Alignment:
Q  92 attcagcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagt 163  Q
    |||||| || |||||| |||||||||||  ||||||   ||||| ||||||||||||||| |||||||||||    
T  10076746 attcagatttgtgtttttgatgtaatcaagaaactcagttgaagtaagtttctcaactaaggtctgaacagt 10076675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 128
Target Start/End: Complemental strand, 10541519 - 10541418
Alignment:
Q  27 tctgcatcatccagcaccgcctgaagagcgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgtttctgatgtaatcacaaaact 126  Q
    ||||||||| ||||||| |  |||||||| | || |||||||| ||| || |||| ||||||| |||| | | |||||||||||||| || ||| |||||    
T  10541519 tctgcatcaaccagcacagattgaagagcaaacaatgttgttttcaattcggccagcagtgagtaattgaacctggtgtttctgatgaaaccacgaaact 10541420  T
Q  127 ct 128  Q
    ||    
T  10541419 ct 10541418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 146455 - 146627
Alignment:
Q  19 gcttcagttctgcatcatccagcaccgcctgaagagcgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgtttctgatgtaatc 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  146455 gcttcagttctgcatcatccagcaccacctgaagagcgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgtttctgatgtaatc 146554  T
Q  119 acaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagaaagaaaagctcctaccaccaaa 191  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||| ||||||||    
T  146555 acaaaactcttgtgaagcaagtttcgcaactaaagtctgaacagtagcagagagaaaagcccctcccaccaaa 146627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 136404 - 136576
Alignment:
Q  19 gcttcagttctgcatcatccagcaccgcctgaagagcgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgtttctgatgtaatc 118  Q
    ||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  136404 gcttctgttctgcatcatcaagaaccgcctgaagagcgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgtttctgatgtaatc 136503  T
Q  119 acaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagaaagaaaagctcctaccaccaaa 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||    
T  136504 acaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagagagaaaagcccctcccaccaaa 136576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 50332 - 50484
Alignment:
Q  30 gcatcatccagcaccgcctgaagagcgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgtttctgatgtaatcacaaaactctt 129  Q
    ||||||||||||||  | ||||||| ||| |||||||||| || ||    ||| ||||||  ||| ||||| |||||| |||||||||||  |||||||     
T  50332 gcatcatccagcacaacttgaagagtgagaagtgttgttttcagctgcctcaagagtgagacattgagcttagtgtttttgatgtaatcaagaaactctg 50431  T
Q  130 gtgaagcaagtttctcaactaaagtctgaacagtagcagaaagaaaagctcct 182  Q
     ||||||||||||||||||||| ||||||||||| ||||  ||||||||||||    
T  50432 ttgaagcaagtttctcaactaaggtctgaacagttgcagtgagaaaagctcct 50484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 27 - 179
Target Start/End: Complemental strand, 26906442 - 26906290
Alignment:
Q  27 tctgcatcatccagcaccgcctgaagagcgagcagtgttgtttccaactctgccaacagtgaggaattcagcttggtgtttctgatgtaatcacaaaact 126  Q
    |||||||||||||||||  |||| |||| ||||||||||||||  | ||    ||| ||||||  ||| |||||||||||| |||||||||||  |||||    
T  26906442 tctgcatcatccagcacaacctgcagagtgagcagtgttgtttttagctgcctcaagagtgagacattgagcttggtgtttttgatgtaatcaagaaact 26906343  T
Q  127 cttgtgaagcaagtttctcaactaaagtctgaacagtagcagaaagaaaagct 179  Q
     |  |||| |||||||||||||||||||||||||| | ||||| |||||||||    
T  26906342 gtgttgaaacaagtttctcaactaaagtctgaacaattgcagagagaaaagct 26906290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 44958273 - 44958357
Alignment:
Q  98 cttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagaaagaaaagctcct 182  Q
    |||||||||| |||||||||||  |||||||  ||||||||||||||||||||| || |||||||| ||||| ||||||||||||    
T  44958273 cttggtgtttttgatgtaatcaagaaactctgttgaagcaagtttctcaactaaggtttgaacagttgcagatagaaaagctcct 44958357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University