View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_low_4 (Length: 506)
Name: NF9115_low_4
Description: NF9115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 276 - 492
Target Start/End: Original strand, 44847428 - 44847644
Alignment:
| Q |
276 |
taaaactctatctcaacttagaaagagcatgcaacttggaagcctgtggtacgaatctttagttttttaattttatatatacataaagtaaaacatgtaa |
375 |
Q |
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| T |
44847428 |
taaaactctatctcaacttagaaagagcatgcaacttggaagcctgtggtacgaatctttagttttttaattttatatatacataaagtaaaacatgtaa |
44847527 |
T |
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| Q |
376 |
ttgattcattagcatcagaatacatttggactggcaaaacaaatggctcagttatcacttcttcgaaaatgcataatttgaatagaagaagttagcgaaa |
475 |
Q |
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| T |
44847528 |
ttgattcattagcatcagaatacatttggactggcaaaacaaatggctcagttattacttcttcgaaaatgcataatttgaatagaagaagttagcgaaa |
44847627 |
T |
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| Q |
476 |
ctatgatcatgatatga |
492 |
Q |
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| T |
44847628 |
ctatgatcatgatatga |
44847644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 63 - 229
Target Start/End: Original strand, 44847209 - 44847375
Alignment:
| Q |
63 |
ctaaattcgaatgaggatggactcaatgtcactgtatggtataactcaacccgcaaggttggattgttgcggattcctcgttctgtcaatctggtataaa |
162 |
Q |
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| T |
44847209 |
ctaaattcgaatgaggatggactcaatgtcactgtatggtataactcaacccgcaaggttggattgttgcggattcctcgttctgtcaatctggtataaa |
44847308 |
T |
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| Q |
163 |
tctaaaacctgttttaattgtttcatcttccttgctgatgttatcctaaatctctaataatggatat |
229 |
Q |
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| T |
44847309 |
tctaaaacctgttttaatcgtttcatcttccttgctgatgttatcctaaatctctaataatggatat |
44847375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 125 - 184
Target Start/End: Original strand, 44860140 - 44860199
Alignment:
| Q |
125 |
attgttgcggattcctcgttctgtcaatctggtataaatctaaaacctgttttaattgtt |
184 |
Q |
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| T |
44860140 |
attgttgcggattcctcgttctgtaaatctggtatatatctaaaacctattttaattgtt |
44860199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 125 - 223
Target Start/End: Original strand, 44896161 - 44896259
Alignment:
| Q |
125 |
attgttgcggattcctcgttctgtcaatctggtataaatctaaaacctgttttaattgtttcatcttccttgctgatgttatcctaaatctctaataat |
223 |
Q |
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| T |
44896161 |
attgttgcgaattcctcgttctataaatttggtatatatctaacacttgttttaatggttgcatcctccttgctgctgctatcctaaatccctaataat |
44896259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 44870887 - 44870959
Alignment:
| Q |
141 |
cgttctgtcaatctggtataaatctaaaacctgttttaattgtttcatcttccttgctgatgttatcctaaat |
213 |
Q |
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| T |
44870887 |
cgttttgtaaatctggtataaatctaaaacctgttttaattgttgcatattccttgccattgttatcctaaat |
44870959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 488
Target Start/End: Original strand, 44861167 - 44861262
Alignment:
| Q |
393 |
gaatacatttggactggcaaaacaaatggctcagttatcacttcttcgaaaatgcataatttgaatagaagaagttagcgaaactatgatcatgat |
488 |
Q |
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| T |
44861167 |
gaatagatttggactggcaaaaaaacttcttcagttattacaacttccaaaatgcataatttgaatggaagaaattagtgaaaccatgatcatgat |
44861262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 365 - 495
Target Start/End: Original strand, 44871701 - 44871836
Alignment:
| Q |
365 |
aaaacatgtaattgattcattagcatcagaatacatttggactggcaaaacaaatggctcagttatcactt-----cttcgaaaatgcataatttgaata |
459 |
Q |
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| T |
44871701 |
aaaacatgtacttgattcattagcataggaatagattttgactggcaaaaaaacttgctcacttattacaatacaactttcaaaatgcataatttgaatg |
44871800 |
T |
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| Q |
460 |
gaagaagttagcgaaactatgatcatgatatgatgt |
495 |
Q |
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| T |
44871801 |
gaaaaagttagtggaactatgatcatggtatgatgt |
44871836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 44896078 - 44896128
Alignment:
| Q |
63 |
ctaaattcgaatgaggatggactcaatgtcactgtatggtataactcaacc |
113 |
Q |
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| T |
44896078 |
ctaaattcgaatgagaatggattcaacgtcactgtatggtacaagtcaacc |
44896128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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