View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_low_8 (Length: 463)
Name: NF9115_low_8
Description: NF9115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_low_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 24027938 - 24028418
Alignment:
| Q |
1 |
catggagactgaacttgtgttattagatagtagatcttcctcagaagtatattgtgtaccagaaagtgactgcgtacaggtcagctggctttgagactga |
100 |
Q |
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| T |
24027938 |
catggagactgaacttgtgttattagatagtagatcttcctcagaagtatattgtgtaccagaaagtgactgcgtacaggtcagctggctttgagactga |
24028037 |
T |
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| Q |
101 |
acttgttcgtatttaggtaagctggattagtaattaaaagcatcattagtgatgaagtggtgcatgacatgtaatacctagtgggaaatgcacaaaaagt |
200 |
Q |
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| T |
24028038 |
acttgttcgtatttaggtaagctggattagtaattaaaagcatcattagtgatgaagtggtgcatgacatgtaatacctagtgggaaatgcacaaaaagt |
24028137 |
T |
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| Q |
201 |
ggtaaatatagcaacctagctctgaattgattgatctctggaatgtcagcattgatgaacaacttagtgtaagagtaagtgtttgaaacactaagaggg- |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
24028138 |
ggtaaatatagcaacctagctctgaattgattgatctctggaatgtcagcattgatgaacaacttagtgtaagaataagtgtttgaaacactgagaggga |
24028237 |
T |
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| Q |
300 |
-----------------aattgaaagatataaacgccattggtttaatatgagtagtagacattaaattactctagcttaaataaatgacggtataacct |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24028238 |
agcgacctatagcagcaaattgaaagatataaacgccattggtttaatatgagtagtagacattaaattactgtagcttaaataaatgacggtataacct |
24028337 |
T |
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| Q |
383 |
tcttctttgattttgcagtaagcaagcataacaatcattgggcctctgtcttttctgtcagtgttaaacttgataaaccta |
463 |
Q |
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| T |
24028338 |
tcttctttgattttgcagtaagcaagcataacaatcagtgggccactatcttttctgtcagtgttaaacttgataaaccta |
24028418 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 292
Target Start/End: Original strand, 10233459 - 10233520
Alignment:
| Q |
231 |
ttgatctctggaatgtcagcattgatgaacaacttagtgtaagagtaagtgtttgaaacact |
292 |
Q |
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|||||||| || |||||| ||||||| ||||| |||||| | ||||||||||| |||||||| |
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| T |
10233459 |
ttgatctcaggcatgtcatcattgataaacaatttagtgaaggagtaagtgttcgaaacact |
10233520 |
T |
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