View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9116_high_6 (Length: 241)
Name: NF9116_high_6
Description: NF9116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9116_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 10 - 233
Target Start/End: Original strand, 18715510 - 18715733
Alignment:
| Q |
10 |
agagatgccaacattgaatgcacttaaggtgaatgacacaaacaaacaaccagaggaaatgcttgttgctaatgatgatgatgcacaagatacaaacaaa |
109 |
Q |
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| T |
18715510 |
agagatgccaacattgaatgcacttaaggtgaatgacacaaacaaacaaccagaggaaatgcttgttgctaatgatgatgatgcacaagatacaaacaaa |
18715609 |
T |
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| Q |
110 |
caatcacaaggagtggctgtacaatcaccaaatttttatcatgtgattattgataatgcgcagtacaacatgaaggttttcaaagaggatcaagttactc |
209 |
Q |
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| T |
18715610 |
caatcacaaggagtggctgtacaatcaccaaatttttatcatgtgattattgataatgcacagtacaacatgaaggttttcaaagaggatcaagttactc |
18715709 |
T |
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| Q |
210 |
ataacagtaatgatgttgatgtcc |
233 |
Q |
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| T |
18715710 |
ataacagtaatgatgttgaggtcc |
18715733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 124
Target Start/End: Complemental strand, 27402083 - 27402004
Alignment:
| Q |
45 |
acacaaacaaacaaccagaggaaatgcttgttgctaatgatgatgatgcacaagatacaaacaaacaatcacaaggagtg |
124 |
Q |
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| T |
27402083 |
acacaaacaaacaatcagaggaagtgcttgttgcaaatgaagaggatgagcaacatacgaacaaacagtcacaagaagtg |
27402004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 47 - 129
Target Start/End: Original strand, 11665767 - 11665849
Alignment:
| Q |
47 |
acaaacaaacaaccagaggaaatgcttgttgctaatgatgatgatgcacaagatacaaacaaacaatcacaaggagtggctgt |
129 |
Q |
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| T |
11665767 |
acaaacaaacgatcagaggaagtgcctgttgctaatgatgatgatgagcaagatacaaacaaacagtcacaagaagtgcctgt |
11665849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 35630448 - 35630379
Alignment:
| Q |
45 |
acacaaacaaacaaccagaggaaatgcttgttgctaatgatgatgatgcacaagatacaaacaaacaatcac |
116 |
Q |
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| T |
35630448 |
acacaaacaaacaatcagaggaagtgcttgttgttagcgatgagga--cgcaagatacaaacaaacagtcac |
35630379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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