View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9116_low_1 (Length: 642)
Name: NF9116_low_1
Description: NF9116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9116_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 8 - 391
Target Start/End: Original strand, 26641760 - 26642141
Alignment:
| Q |
8 |
ggagaagcagagacaaggatgcagatgaatgatgaagatgaagggtagcaaacagtttggcaccgccagagacggcgaagataaatggtgaggagcaggt |
107 |
Q |
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| T |
26641760 |
ggagaatcagagacaaggatgcagatgaatgatgaagatgaagggtagcgaacagtttggcaccgccagagacgacgaaggtaaatggtggggagcaggt |
26641859 |
T |
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| Q |
108 |
tgccgtcgtgttgaagatgaatggagcggtgacttaggatgtttagagttcagacttaggaaactgttgaaattagatccatgtggagttaaacattcgt |
207 |
Q |
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| T |
26641860 |
tgccgtcgtgttgaagatgaatggagcggtgacttaggatgtttagagttcagacttaggaaacggttgaaattagatccatgtggagttaaacattcgt |
26641959 |
T |
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| Q |
208 |
gcttcggaaaaggtaaaccagtcaccagtgtaccatttcattgaattggtttctagagcaaaaccatatgatagtccaaaaatcgagcaatatactacct |
307 |
Q |
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| T |
26641960 |
gtttcggaaaaggtaaaccagtcaccagtgtaccatttcattgaattggtttctaaagcaaagccatatg--agtccaaaaatcaagcaatatactacct |
26642057 |
T |
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| Q |
308 |
gggttccttaaatataaatttcattaatactatcctgcaattcacaaatcaataaatgctggtacatgtacagttacactatat |
391 |
Q |
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| T |
26642058 |
gggttccttaaatataaatttcattaatactattctgcaattcacaaatttataaatgctggtacatgtacagttacactatat |
26642141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 398 - 623
Target Start/End: Original strand, 26642172 - 26642392
Alignment:
| Q |
398 |
tttgttttgtagatggctggatcattctgaattcactgatgcctcaggccaaccagttcaatatcaaatataagtgtccctaaagttgaaccttcaccat |
497 |
Q |
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| T |
26642172 |
tttgtttactagattgctggatcattctgaattcactgatgcctcaagccaaccagttcaatatcaaatataagtgtccctaaagttgaaccttcaccat |
26642271 |
T |
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| Q |
498 |
ttgcaagtcgagtcggattaaaaatggtagtgaacagcctctgcctgtcaaagaacttttttattttatttgaaagaagacattaaaaattagtactata |
597 |
Q |
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| T |
26642272 |
ttgcaagtcgagtcggattaaaaatggtagtgaacagcctctgcctgtcaaagaactttttt-tttta----aaagaatacaataaaaattagtactgta |
26642366 |
T |
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| Q |
598 |
gtcgtcaatcaaacgtatataattag |
623 |
Q |
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| T |
26642367 |
gtggtcaatcaaacgtatataattag |
26642392 |
T |
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