View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9116_low_12 (Length: 253)
Name: NF9116_low_12
Description: NF9116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9116_low_12 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 7243574 - 7243817
Alignment:
| Q |
10 |
tttcgtgttgaagaattactcttagctttgttgcttgcttcttcgatcaacaacacactctcaacaactggttttcgtttgtacgtttcctctcatctga |
109 |
Q |
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|||| ||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
7243574 |
tttcttgtcgaagaactactcttagctttgttggttgcttcttcgatcaacaacacactctcaagaactggttttcgtttgtacgtttcctctcttctga |
7243673 |
T |
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| Q |
110 |
ctgcaaattgcaatggcttttttcattggcaacccatcattccctgctggtctcaaggttattgctattgatcatgacatcgctgttcttaacactattg |
209 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7243674 |
ctgcaaattgcaatggcttttttcattgacaacccatcattccctgctggtctcaaggttattgctattgatcatgacatcactgttcttaacactattg |
7243773 |
T |
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| Q |
210 |
aggatatgtgtaatcgattccattatcaaggttagtcactttgt |
253 |
Q |
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| T |
7243774 |
aggatatgtgtaatcgattccattatcaaggttagtcactttgt |
7243817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 7324775 - 7324542
Alignment:
| Q |
10 |
tttcgtgttgaagaattactcttagctttgttgcttgcttcttcgatcaacaacacactctcaacaactggttttcgtttgtacgtttcctctcatctga |
109 |
Q |
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| T |
7324775 |
tttcttgttgaacatttactcataggtttgttggttgcttcttcgatcaacaacacactctcaacaactgtttttcgtttgt--gtttccagtcttcttt |
7324678 |
T |
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| Q |
110 |
ctgcaaattgcaatggcttttttcattggcaacccatcattccctgctggtctcaaggttattgctattgatcatgacatcgctgttcttaacactattg |
209 |
Q |
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| T |
7324677 |
tcataaatcgtaatggcccgtttcgttgacaacccatcattccctgctggtctaagggttattgccattgatcatgacatcattgttcttaacactattg |
7324578 |
T |
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| Q |
210 |
aggatatgtgtaatcgattccattatcaaggttagt |
245 |
Q |
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| T |
7324577 |
aggatatgtgtaatcgatatcattatcaaggttagt |
7324542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 109 - 242
Target Start/End: Complemental strand, 7317896 - 7317763
Alignment:
| Q |
109 |
actgcaaattgcaatggcttttttcattggcaacccatcattccctgctggtctcaaggttattgctattgatcatgacatcgctgttcttaacactatt |
208 |
Q |
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| T |
7317896 |
actgaaaattgtaatggcggttttcactgacaacccatcattcccagccggtctcaaggttattgcaattgatcatgacatcactttcctcaactctatt |
7317797 |
T |
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| Q |
209 |
gaggatatgtgtaatcgattccattatcaaggtt |
242 |
Q |
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| T |
7317796 |
gaggagatgtgtaatcgatatcattaccaaggtt |
7317763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 244
Target Start/End: Original strand, 8161909 - 8162039
Alignment:
| Q |
114 |
aaattgcaatggcttttttcattggcaacccatcattccctgctggtctcaaggttattgctattgatcatgacatcgctgttcttaacactattgagga |
213 |
Q |
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||||||||||| | ||||||||| ||| ||||||||||| | |||||| |||| |||| ||||||||||||||| || | ||||| | || ||||| |
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| T |
8161909 |
aaattgcaatgacccttttcattgacaaaccatcattcccagaaggtctctaggtccttgcaattgatcatgacatcactctccttaattccatcgagga |
8162008 |
T |
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| Q |
214 |
tatgtgtaatcgattccattatcaaggttag |
244 |
Q |
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| T |
8162009 |
gatgtgtaatcgatgcaattatcaaggttag |
8162039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 245
Target Start/End: Original strand, 7218225 - 7218326
Alignment:
| Q |
144 |
catcattccctgctggtctcaaggttattgctattgatcatgacatcgctgttcttaacactattgaggatatgtgtaatcgattccattatcaaggtta |
243 |
Q |
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| T |
7218225 |
catcattcccagaaggtctcaaggttcttgcaattgatcatgacatcactctcctgaattccatcgaggagatgtgtaatcgatgcaattataagggtta |
7218324 |
T |
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| Q |
244 |
gt |
245 |
Q |
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|| |
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| T |
7218325 |
gt |
7218326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 129 - 250
Target Start/End: Complemental strand, 22766677 - 22766556
Alignment:
| Q |
129 |
ttttcattggcaacccatcattccctgctggtctcaaggttattgctattgatcatgacatcgctgttcttaacactattgaggatatgtgtaatcgatt |
228 |
Q |
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||||||| | ||||||||||||||||| ||||||||| |||||||| ||||||||||||| | || | |||||||| |||||||| ||||||||||||| |
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| T |
22766677 |
ttttcatcgacaacccatcattccctgatggtctcaacgttattgcaattgatcatgacaccactttccttaacaccattgaggagatgtgtaatcgatg |
22766578 |
T |
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| Q |
229 |
ccattatcaaggttagtcactt |
250 |
Q |
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|||||||||||||||| |||| |
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| T |
22766577 |
tcattatcaaggttagttactt |
22766556 |
T |
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