View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9116_low_4 (Length: 534)
Name: NF9116_low_4
Description: NF9116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9116_low_4 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr2 (5 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 19 - 534
Target Start/End: Original strand, 14783363 - 14783878
Alignment:
| Q |
19 |
taaaccccatttcctacagtcacatgatttttggcctaaattcacaatatatgtgtcagttccatttgtcacactaaaaatggcataatcatcatcaaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14783363 |
taaaccccatttcctacagtcacatgatttttggcctaaattcacaatatatgtgtcagttccatttgtcacactaaaaatggcataatcatcatcaaaa |
14783462 |
T |
|
| Q |
119 |
tgccaagttggttcccatccatcagctaccctctttactttttcaagttgtagttggattataggacatatattccctctatatctttgcatgagatcct |
218 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14783463 |
tgccaagttggttcccatccatcaactaccctctttactttttcaagttgtagttggattataggacatatattccctctatatctttgcatgagatcct |
14783562 |
T |
|
| Q |
219 |
tctgggctccaattctttttgtgaggtagtgcttaattccttctagaagagtgatgatgtgtttatctctatactccaatattgcccggttaaatgcctc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14783563 |
tctgggctccaattctttttgtgaggtagtgcttaattccttctagaagagtgatgatgtgtttatctctatactccaatattgcccggttaaatgcctc |
14783662 |
T |
|
| Q |
319 |
acacatgttgttaacttgtaagtctgattgtgtatccatcttgaaatgagatctagtccacattgcaggtgcccaattcttattcatgtattcccaagct |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14783663 |
acacatgttgttaacttgtaagtctgattgtgtatccatcttgaaatgagatctagtccacattgcaggtgcccaattcttattcatgtattcccaagct |
14783762 |
T |
|
| Q |
419 |
ttgtcgttaatcaatttcattcgattcattgctctctcccatgctggaacagttgtaacccttgctgccatccaaaacacttcctttaaatccaatccag |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14783763 |
ttgtcgttaatcaatttcattcgattcattgctctctcccatgctggaacagttgtagcccttgctgccatccaaaacacttcctttaaatccaatccag |
14783862 |
T |
|
| Q |
519 |
gatatcttttcttaaa |
534 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
14783863 |
gatatcttttcttaaa |
14783878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 436; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 19 - 534
Target Start/End: Complemental strand, 33574080 - 33573565
Alignment:
| Q |
19 |
taaaccccatttcctacagtcacatgatttttggcctaaattcacaatatatgtgtcagttccatttgtcacactaaaaatggcataatcatcatcaaaa |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |
|
|
| T |
33574080 |
taaaccccatttcctacggtcacatgatttttgggctaaattcacaatatatgtgtcagttccatttgtcacgctaaatatggcatactcatcatcaaaa |
33573981 |
T |
|
| Q |
119 |
tgccaagttggttcccatccatcagctaccctctttactttttcaagttgtagttggattataggacatatattccctctatatctttgcatgagatcct |
218 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33573980 |
tgccaagttggttcccatccatcaactaccttctttgctttttcaagttgtagttggattataggacatatattccctctatatctttgcatgagatcct |
33573881 |
T |
|
| Q |
219 |
tctgggctccaattctttttgtgaggtagtgcttaattccttctagaagagtgatgatgtgtttatctctatactccaatattgcccggttaaatgcctc |
318 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
33573880 |
tctgggcttcagttctttttgtgaggtagtgcttaattccttctagaagagtgataatgtgtttatctctatactacaatattggccggttaaatgcctc |
33573781 |
T |
|
| Q |
319 |
acacatgttgttaacttgtaagtctgattgtgtatccatcttgaaatgagatctagtccacattgcaggtgcccaattcttattcatgtattcccaagct |
418 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33573780 |
acaaatgttgttaacttgtaagtctgattgtgtatccatcttaaaatgagatctagtccacattgcaggtgcccaattcttattcatgtattcccaagct |
33573681 |
T |
|
| Q |
419 |
ttgtcgttaatcaatttcattcgattcattgctctctcccatgctggaacagttgtaacccttgctgccatccaaaacacttcctttaaatccaatccag |
518 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
33573680 |
ttgtcgttaattaatttcatttgattcattgctctctcccatactggaacagttgtagcccttcctgccatccaaaacacttcctttaaatccaatccag |
33573581 |
T |
|
| Q |
519 |
gatatcttttcttaaa |
534 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
33573580 |
gatatcttttcttaaa |
33573565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 202 - 321
Target Start/End: Original strand, 44920809 - 44920928
Alignment:
| Q |
202 |
tctttgcatgagatccttctgggctccaattctttttgtgaggtagtgcttaattccttctagaagagtgatgatgtgtttatctctatactccaatatt |
301 |
Q |
| |
|
||||| ||||||| ||||||| ||||||||||||||||| ||||| |||||||||||||||| |||||| ||||| ||||| |||| ||||||||||||| |
|
|
| T |
44920809 |
tctttacatgagacccttctgcgctccaattctttttgtaaggtaatgcttaattccttctaaaagagtaatgatatgtttgtctccatactccaatatt |
44920908 |
T |
|
| Q |
302 |
gcccggttaaatgcctcaca |
321 |
Q |
| |
|
||| ||||||||||| |||| |
|
|
| T |
44920909 |
gccgggttaaatgccccaca |
44920928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 443 - 504
Target Start/End: Original strand, 44924394 - 44924455
Alignment:
| Q |
443 |
ttcattgctctctcccatgctggaacagttgtaacccttgctgccatccaaaacacttcctt |
504 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||| |||||||| |||| ||||||||||||| |
|
|
| T |
44924394 |
ttcattgctctctcccatgctggtacaattgtagcccttgctttcatctaaaacacttcctt |
44924455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 342
Target Start/End: Original strand, 20190866 - 20190894
Alignment:
| Q |
314 |
gcctcacacatgttgttaacttgtaagtc |
342 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
20190866 |
gcctcacacatgttgttaacttgtaagtc |
20190894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 383
Target Start/End: Original strand, 44924281 - 44924337
Alignment:
| Q |
327 |
tgttaacttgtaagtctgattgtgtatccatcttgaaatgagatctagtccacattg |
383 |
Q |
| |
|
||||||||||||| | ||||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
44924281 |
tgttaacttgtaaatttgattgtgtgtctttcttgaaatgagatctaacccacattg |
44924337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 265 - 534
Target Start/End: Complemental strand, 29194160 - 29193889
Alignment:
| Q |
265 |
aagagtgatgatgtgtttatctctatactccaatattgcccggttaaatgcctcacaca--tgttgttaacttgtaagtctgattgtgtatccatcttga |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29194160 |
aagagtgatgatgtgtttatctctatactccaatattgcccggttaaatgcctcacacacatgttgttaacttgtaagtttgattgtgtatccatcttga |
29194061 |
T |
|
| Q |
363 |
aatgagatctagtccacattgcaggtgcccaattcttattcatgtattcccaagctttgtcgttaatcaatttcattcgattcattgctctctcccatgc |
462 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
29194060 |
aatgagatctagtccacattgcaggtgcccaattcttattcatgtattcccaagctttgtcgttaattaatttcattcaattcattgctctctcccatgc |
29193961 |
T |
|
| Q |
463 |
tggaacagttgtaacccttgctgccatccaaaacacttcctttaaatccaatccaggatatcttttcttaaa |
534 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29193960 |
tggaacagttgtagcccttgctgccatccaaaacacttcctttaaatccaatccaggatatcttttcttaaa |
29193889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 163; Significance: 8e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 356 - 534
Target Start/End: Original strand, 33365832 - 33366010
Alignment:
| Q |
356 |
atcttgaaatgagatctagtccacattgcaggtgcccaattcttattcatgtattcccaagctttgtcgttaatcaatttcattcgattcattgctctct |
455 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33365832 |
atcttgaaatgagatctagtccacattggaggtgcccaattcttattcatgtattcccaagctttgtcgttaattaatttcattcgattcattgctctct |
33365931 |
T |
|
| Q |
456 |
cccatgctggaacagttgtaacccttgctgccatccaaaacacttcctttaaatccaatccaggatatcttttcttaaa |
534 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33365932 |
cccatgctggaacagttgtagcccttgctgccatccaaaacacttcccttaaatccaatccaggatatcttttcttaaa |
33366010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University