View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9116_low_6 (Length: 298)
Name: NF9116_low_6
Description: NF9116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9116_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 85 - 280
Target Start/End: Original strand, 39197500 - 39197706
Alignment:
| Q |
85 |
taaggaaagagcgttcttagcatatttctcttttgtttaatg-----------aataaaacaaaatataataaactgtccctttgcatttcgaggtggtg |
173 |
Q |
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| T |
39197500 |
taaggaaagagcgttcttagcatatttctcatttgtttaatgtaatactaacgaataaaacaaaatataatagaatgtccctttgcatttcgaggtggtg |
39197599 |
T |
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| Q |
174 |
atttttgatttttatcttaaataaatgagtaaaataataaatggagggaaaagagattgacagagaaggaaggtaagacagttgtacattgggacttgcc |
273 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39197600 |
attttttatttttatcttaaataaatgagtaaaataataaatggagggaaaagagattgacagagaaggaaggtaagacagttgtacattgggacttgcc |
39197699 |
T |
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| Q |
274 |
acgcacg |
280 |
Q |
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||||||| |
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| T |
39197700 |
acgcacg |
39197706 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 2575826 - 2575872
Alignment:
| Q |
203 |
taaaataataaatggagggaaaagagattgacagagaaggaaggtaa |
249 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
2575826 |
taaaataacaaatggagggaaaagagattgacagagagggaaggtaa |
2575872 |
T |
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