View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9118_high_2 (Length: 636)
Name: NF9118_high_2
Description: NF9118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9118_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 6e-82; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 254 - 618
Target Start/End: Original strand, 48466280 - 48466652
Alignment:
| Q |
254 |
tagtgaaagtcc-aagaatgtattcaaccaagtgatcgaattagaaaatgaagcaaagtgcttgcttaaacgagtccctggcatcatagtgcttgagaat |
352 |
Q |
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|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||| || || |||||| |||||| |
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| T |
48466280 |
tagtgaaagtcccaagaatgtattcaaccaagcgatcgaattagaaaatgaagcaaagttcttgattaaacgagtcccgggaatttcagtgctcgagaat |
48466379 |
T |
|
| Q |
353 |
taaaccttggaaaacaatagttctaagagtcctttctttctacagtttgcacatttctatgatactgatttccacttacaacaagcaaatctttaatcac |
452 |
Q |
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|||||||||||||||| ||| ||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| |||||||||||| |||||| |
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| T |
48466380 |
taaaccttggaaaacagtaggtctaatagtcctttctttctacagtttccacatttctatgatactgagttccactcacagcaagcaaatcttgaatcac |
48466479 |
T |
|
| Q |
453 |
caattcaccacatnnnnnnnnnnnnnnnnnnnnnnnncacatagcacggttctctaaacaatgtaatacctttgtaacaaatattaccaaataaacactg |
552 |
Q |
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|||||||| |||| |||| ||| |||||||||||||||||||||||||||||||||||| || |||||||| ||| |
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| T |
48466480 |
caattcactacattaaaaaatgcagacaaaacaaaaacacagtgcatggttctctaaacaatgtaatacctttgtaacaaataatatcaaataaaaactt |
48466579 |
T |
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| Q |
553 |
ctgattcacgctacatggat-------tcagaattatagtttaccaaaagtagcaaaaatcaaaacaaataca |
618 |
Q |
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| T |
48466580 |
ctgattcacactatatggattcagaaatcagaattacagtttaccaaaagtagcaaaaatcaaaacaaataca |
48466652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 271 - 353
Target Start/End: Original strand, 25585238 - 25585320
Alignment:
| Q |
271 |
tgtattcaaccaagtgatcgaattagaaaatgaagcaaagtgcttgcttaaacgagtccctggcatcatagtgcttgagaatt |
353 |
Q |
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| T |
25585238 |
tgtattcaaccaagcgattgaattagcaaatgaagcaaagtcctctcttaaacgattccctggaatcttagtgcttgagaatt |
25585320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 353
Target Start/End: Original strand, 25590121 - 25590203
Alignment:
| Q |
271 |
tgtattcaaccaagtgatcgaattagaaaatgaagcaaagtgcttgcttaaacgagtccctggcatcatagtgcttgagaatt |
353 |
Q |
| |
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|||||| || |||| ||| ||||||| |||||||||||||| ||||| |||||| |||||||| || |||||||||||||| |
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| T |
25590121 |
tgtatttaaacaagcgattgaattagcaaatgaagcaaagtttttgctaaaacgaatccctggcgtctcagtgcttgagaatt |
25590203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 353
Target Start/End: Original strand, 25599773 - 25599855
Alignment:
| Q |
271 |
tgtattcaaccaagtgatcgaattagaaaatgaagcaaagtgcttgcttaaacgagtccctggcatcatagtgcttgagaatt |
353 |
Q |
| |
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|||||| || |||| ||| ||||||| |||||||||||||| ||||| |||||| |||||||| || |||||||||||||| |
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| T |
25599773 |
tgtatttaaacaagcgattgaattagcaaatgaagcaaagtttttgctaaaacgaatccctggcgtctcagtgcttgagaatt |
25599855 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 254 - 441
Target Start/End: Original strand, 42077053 - 42077241
Alignment:
| Q |
254 |
tagtgaaagtcc-aagaatgtattcaaccaagtgatcgaattagaaaatgaagcaaagtgcttgcttaaacgagtccctggcatcatagtgcttgagaat |
352 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||| |
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| T |
42077053 |
tagtgaaagtcccaagaatgtattcaaccaagcgatcgaattagaaaatgaagcaaagtgcttgcttaaacgaatctctggcatctcagtgcttgagaat |
42077152 |
T |
|
| Q |
353 |
taaaccttggaaaacaatagttctaagagtcctttctttctacagtttgcacatttctatgatactgatttccacttacaacaagcaaa |
441 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||| |
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| T |
42077153 |
taaaccttggaaaacaataggtctaatagtcctttctttctacagtttccacatttctatgatacttatttccactcacaacaagcaaa |
42077241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 9632887 - 9632745
Alignment:
| Q |
1 |
caaaacccaattcaactagtaaagagacacaagataaaatctagaaatccaacgaagccaataaccagaaaatgtcacttttgatatgaaaccacatcaa |
100 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||| | |||||||| | |||| |||||||||||||| ||| | |||||||| ||| |||| |
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| T |
9632887 |
caaaactcaataaaactagtaaagagacacaagataaaaaccagaaatcctcccaagcttataaccagaaaatgccacctctgatatgagcccaaatcag |
9632788 |
T |
|
| Q |
101 |
actctgctactaactgtcaataaacagacaacaacatagacaa |
143 |
Q |
| |
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| T |
9632787 |
accctgctactaaatgtcaataaacaggcagcaacatagacaa |
9632745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 23437144 - 23437285
Alignment:
| Q |
1 |
caaaacccaattcaactagtaaagagacacaagataaaatctagaaatccaacgaagccaataaccagaaaatgtcacttttgatatgaaaccacatcaa |
100 |
Q |
| |
|
||||||||||| ||||||||| ||| |||| || ||| | |||||||| | ||||| |||||||||||||| ||||||||||||| ||| |||| |
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| T |
23437144 |
caaaacccaataagactagtaaa-agagacaaaatcaaaaccagaaatcctcctaagcctataaccagaaaatgatacttttgatatgagcccagatcag |
23437242 |
T |
|
| Q |
101 |
actctgctactaactgtcaataaacagacaacaacatagacaa |
143 |
Q |
| |
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|| |||||||||||| ||||||||||| ||||||| ||||||| |
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| T |
23437243 |
accctgctactaactatcaataaacaggcaacaacgtagacaa |
23437285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 22967424 - 22967566
Alignment:
| Q |
1 |
caaaacccaattcaactagtaaagagacacaagataaaatctagaaatccaacgaagccaataaccagaaaatgtcacttttgatatgaaaccacatcaa |
100 |
Q |
| |
|
|||||| |||| |||||||||||||||||| ||||||| | ||| |||| | |||| |||||||||||||| ||| |||||||||| ||| |||| |
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| T |
22967424 |
caaaactcaataaaactagtaaagagacacacgataaaaaccagatatcctcccaagcttataaccagaaaatgccacctttgatatgagcccaaatcag |
22967523 |
T |
|
| Q |
101 |
actctgctactaactgtcaataaacagacaacaacatagacaa |
143 |
Q |
| |
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|| |||||||||| ||||||||||||| || |||| ||||||| |
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| T |
22967524 |
accctgctactaattgtcaataaacaggcagcaacgtagacaa |
22967566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 22967948 - 22968030
Alignment:
| Q |
61 |
ataaccagaaaatgtcacttttgatatgaaaccacatcaaactctgctactaactgtcaataaacagacaacaacatagacaa |
143 |
Q |
| |
|
|||||||||||||| ||| | |||||||| ||| |||| || |||||||||| |||||||||||||||| |||||||||||| |
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|
| T |
22967948 |
ataaccagaaaatgccacctctgatatgagcccaaatcagaccctgctactaaatgtcaataaacagacagcaacatagacaa |
22968030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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