View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9118_high_9 (Length: 253)
Name: NF9118_high_9
Description: NF9118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9118_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 9282334 - 9282105
Alignment:
| Q |
1 |
cgatgaccaacattgaaggccttaaggattgtgccgaggtagttggaaannnnnnnggattttatttgattccttttctgccgaggaatactttctcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9282334 |
cgatgaccaacattgaaggccttaaggattgtgccgaggtagttggaattttttttggattttatttgattccttttctgccgaggaatactttctcaat |
9282235 |
T |
|
| Q |
101 |
ttgttctcattgcgtatttattcattttcttaaggagaaaattgatattctcaattcgttctaatttgtgtatttattgatttactttgtattaacacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9282234 |
ttgttctcattgcgtatttattcattttcttaaggagaaaattgatattctcaattcgttctaatttgtgtatttattgatttactttgtattaacacaa |
9282135 |
T |
|
| Q |
201 |
actatatttatatggtagacaattcataaa |
230 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |
|
|
| T |
9282134 |
actatatttacatggtagacaattcataaa |
9282105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 49713563 - 49713523
Alignment:
| Q |
1 |
cgatgaccaacattgaaggccttaaggattgtgccgaggta |
41 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
49713563 |
cgatgaccaccgttgaaggccttaaggattgtgccgaggta |
49713523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 21414602 - 21414574
Alignment:
| Q |
13 |
ttgaaggccttaaggattgtgccgaggta |
41 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
21414602 |
ttgaaggccttaaggattgtgccgaggta |
21414574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University