View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9118_low_1 (Length: 827)
Name: NF9118_low_1
Description: NF9118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9118_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 10 - 501
Target Start/End: Original strand, 7720553 - 7721046
Alignment:
| Q |
10 |
gagtttggtgttcgtcaagtggattgtaggaatctattaaactttaaatgtcgaaatt-------------gctgtttaaaaaatgtagttgctcacact |
96 |
Q |
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| T |
7720553 |
gagtttggtgttcgtcaagtggattgtaggaacctattaaactttaaatgtcaaaattctaatgttgatgagctcgttaaagaatgtagttgttcacact |
7720652 |
T |
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| Q |
97 |
ttagttaagatgactacatatatggttagtcttcttttatgagtttttctcttaataggctaaattttattgaaacatttagtccatatatagcacaagg |
196 |
Q |
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| T |
7720653 |
ttagttaagatgactacatatatggttagtcttcttttatgagtttttttcttaataggctaaattttattgaaacatttagtccatatatagcacaagg |
7720752 |
T |
|
| Q |
197 |
ggtgatagtgaactaaggaaattacaagattactacaaagttcataagggaaacataaacatacaaacttaaacaactaaagacccctaacacatagata |
296 |
Q |
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| T |
7720753 |
ggtgatagtgaactaaggaaattacaagattactacaaagttcataagggaaacagaaacatacaaacttaaacaactaaagacccctaatacatagata |
7720852 |
T |
|
| Q |
297 |
aaaacgtatagtagcaccccactccaaaatcacaacaccaaacagcactcacaacctgcaacccaaaaacaatctccacagacaaacattaatgaaatcg |
396 |
Q |
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| T |
7720853 |
aaaacgtatagtagcaccccactccaaaatcacaacaccaaacagcactcacaacctgcaacccaaaaacaatctccacagacaaac---aatgaaatcg |
7720949 |
T |
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| Q |
397 |
acccaagcaccaattttatcaacactcaaaacactccaacaccagccaaaagaggcacattacaacaccnnnnnnnccacacctaaacctgttaatatca |
496 |
Q |
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| T |
7720950 |
acccaggcaccaattttatcaacactcaa--------aacaccagccaaaagaggcacattacaacaccaaaaaaaccacacctaaacctgttaatatca |
7721041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 609 - 791
Target Start/End: Original strand, 7721155 - 7721337
Alignment:
| Q |
609 |
ccttcacccgctactcgcaaaacaagtggtaaagacaaaacaactctatacttgcacaactagaacagtaaagacaaaacaactccatgtatcacagcaa |
708 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7721155 |
ccttcacccgctactcgcaaaacaagtggcaaagacaaaacaactctatacttgcacaactagaacagtaaagacaaaacaactccatgtatcacagcaa |
7721254 |
T |
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| Q |
709 |
gaccactccaaacactcatgtccccgaccaaaactagacaccttcagaagaagggaaaaataaaacacatcaagcacaagggg |
791 |
Q |
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| T |
7721255 |
gaccactccaaacactcatgtccccgaccaaaactagacaccttcagaagaagggaaaaataaaacacatcaagcacaagggg |
7721337 |
T |
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