View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9118_low_10 (Length: 511)

Name: NF9118_low_10
Description: NF9118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9118_low_10
NF9118_low_10
[»] chr8 (16 HSPs)
chr8 (20-305)||(37929033-37929318)
chr8 (20-305)||(31686316-31686601)
chr8 (305-498)||(37928805-37928998)
chr8 (305-498)||(31686636-31686829)
chr8 (99-232)||(8462480-8462613)
chr8 (117-197)||(38685794-38685874)
chr8 (102-223)||(5048494-5048615)
chr8 (132-197)||(33191203-33191268)
chr8 (115-232)||(41255020-41255137)
chr8 (115-197)||(10616938-10617020)
chr8 (99-232)||(29216938-29217070)
chr8 (138-197)||(7179036-7179095)
chr8 (97-232)||(39435419-39435553)
chr8 (117-197)||(38233236-38233316)
chr8 (125-197)||(21523894-21523966)
chr8 (135-202)||(33282844-33282911)
[»] chr7 (16 HSPs)
chr7 (20-258)||(38153878-38154116)
chr7 (99-217)||(34237168-34237286)
chr7 (97-229)||(17116368-17116500)
chr7 (115-197)||(40616717-40616799)
chr7 (141-232)||(27854881-27854972)
chr7 (102-232)||(41529389-41529519)
chr7 (115-232)||(47543425-47543542)
chr7 (115-218)||(42017800-42017903)
chr7 (138-232)||(12092675-12092769)
chr7 (135-197)||(38342998-38343060)
chr7 (378-434)||(23710755-23710811)
chr7 (382-434)||(47543184-47543236)
chr7 (160-238)||(4997971-4998049)
chr7 (115-197)||(26569741-26569823)
chr7 (141-199)||(27076604-27076662)
chr7 (141-199)||(27201639-27201697)
[»] chr1 (25 HSPs)
chr1 (22-281)||(5958217-5958475)
chr1 (103-233)||(34703453-34703583)
chr1 (368-498)||(36098891-36099022)
chr1 (99-229)||(44675097-44675227)
chr1 (135-232)||(12688177-12688274)
chr1 (105-217)||(36098593-36098705)
chr1 (110-233)||(6723689-6723812)
chr1 (135-197)||(5411773-5411835)
chr1 (108-233)||(10686161-10686286)
chr1 (117-197)||(28442130-28442210)
chr1 (115-214)||(26260768-26260867)
chr1 (132-217)||(4889464-4889549)
chr1 (141-197)||(45718367-45718423)
chr1 (99-197)||(9484879-9484977)
chr1 (139-233)||(27568381-27568475)
chr1 (135-197)||(48973685-48973747)
chr1 (132-197)||(28400529-28400594)
chr1 (99-223)||(25392289-25392413)
chr1 (382-434)||(32159831-32159883)
chr1 (134-173)||(52251399-52251438)
chr1 (117-193)||(50039686-50039759)
chr1 (383-428)||(40708729-40708774)
chr1 (138-202)||(23997141-23997205)
chr1 (131-199)||(42450626-42450694)
chr1 (138-174)||(52626563-52626599)
[»] chr2 (23 HSPs)
chr2 (28-284)||(33645730-33645988)
chr2 (99-229)||(27009200-27009330)
chr2 (103-305)||(30505641-30505843)
chr2 (104-289)||(27708158-27708343)
chr2 (103-292)||(39117357-39117546)
chr2 (115-197)||(841531-841613)
chr2 (99-229)||(9840768-9840898)
chr2 (104-305)||(37738057-37738259)
chr2 (132-232)||(24739816-24739916)
chr2 (139-295)||(44735982-44736138)
chr2 (102-232)||(36176612-36176741)
chr2 (132-218)||(18766683-18766769)
chr2 (115-176)||(40426909-40426970)
chr2 (135-229)||(31640241-31640335)
chr2 (107-292)||(35590162-35590347)
chr2 (117-197)||(1997682-1997762)
chr2 (370-431)||(30505480-30505541)
chr2 (115-174)||(8090525-8090584)
chr2 (135-194)||(38409024-38409083)
chr2 (138-197)||(45131132-45131191)
chr2 (131-197)||(9933090-9933156)
chr2 (131-199)||(18948827-18948895)
chr2 (378-434)||(27708467-27708523)
[»] chr4 (24 HSPs)
chr4 (115-232)||(10552637-10552754)
chr4 (102-284)||(29969791-29969973)
chr4 (100-229)||(25130409-25130538)
chr4 (115-199)||(13137112-13137196)
chr4 (102-305)||(20510319-20510522)
chr4 (99-305)||(52577910-52578116)
chr4 (132-233)||(9831382-9831483)
chr4 (104-283)||(30972360-30972539)
chr4 (132-199)||(40153925-40153992)
chr4 (99-305)||(22653213-22653419)
chr4 (117-232)||(11131172-11131287)
chr4 (99-197)||(27269973-27270071)
chr4 (115-197)||(42527325-42527407)
chr4 (115-175)||(54870801-54870861)
chr4 (367-498)||(9831083-9831214)
chr4 (117-197)||(30739504-30739584)
chr4 (110-197)||(48336994-48337081)
chr4 (99-197)||(21204865-21204963)
chr4 (131-185)||(37772958-37773012)
chr4 (117-197)||(18921946-18922026)
chr4 (135-202)||(12115024-12115091)
chr4 (99-197)||(29521656-29521754)
chr4 (133-223)||(43001717-43001807)
chr4 (135-196)||(37207398-37207459)
[»] chr6 (25 HSPs)
chr6 (115-231)||(32533047-32533163)
chr6 (99-232)||(2682761-2682894)
chr6 (115-197)||(18672069-18672150)
chr6 (104-228)||(12688190-12688314)
chr6 (97-233)||(9907156-9907292)
chr6 (138-197)||(11298598-11298657)
chr6 (119-197)||(15117238-15117316)
chr6 (99-229)||(34714917-34715047)
chr6 (135-232)||(17292769-17292866)
chr6 (135-232)||(18015748-18015845)
chr6 (135-283)||(11324415-11324563)
chr6 (104-232)||(27105270-27105398)
chr6 (104-232)||(27147079-27147207)
chr6 (370-473)||(2682485-2682588)
chr6 (131-233)||(22469420-22469522)
chr6 (115-233)||(7824120-7824238)
chr6 (138-197)||(29321330-29321389)
chr6 (98-228)||(7155422-7155552)
chr6 (382-472)||(32197102-32197192)
chr6 (105-197)||(14215993-14216085)
chr6 (138-183)||(10944161-10944206)
chr6 (135-232)||(18673363-18673460)
chr6 (115-175)||(5667348-5667408)
chr6 (376-428)||(29599430-29599481)
chr6 (263-303)||(31454171-31454211)
[»] chr5 (21 HSPs)
chr5 (115-283)||(27482654-27482822)
chr5 (100-305)||(25326049-25326254)
chr5 (108-305)||(12831489-12831686)
chr5 (99-232)||(19314970-19315103)
chr5 (108-305)||(12863464-12863661)
chr5 (117-232)||(7961129-7961244)
chr5 (370-497)||(25325823-25325950)
chr5 (99-218)||(26778687-26778805)
chr5 (365-498)||(27482939-27483072)
chr5 (126-197)||(39839938-39840009)
chr5 (135-202)||(29994647-29994714)
chr5 (132-217)||(4396672-4396757)
chr5 (100-197)||(11305855-11305951)
chr5 (117-197)||(7465257-7465337)
chr5 (135-202)||(32252148-32252215)
chr5 (108-198)||(16610601-16610691)
chr5 (135-175)||(21042005-21042045)
chr5 (115-160)||(29651782-29651827)
chr5 (115-232)||(31706408-31706525)
chr5 (140-197)||(32017992-32018049)
chr5 (138-202)||(18967882-18967946)
[»] chr3 (20 HSPs)
chr3 (102-231)||(33692870-33692999)
chr3 (138-197)||(29542393-29542452)
chr3 (138-197)||(41878726-41878785)
chr3 (141-197)||(19979287-19979343)
chr3 (138-233)||(25845646-25845741)
chr3 (115-198)||(26285215-26285298)
chr3 (132-197)||(42806289-42806354)
chr3 (115-231)||(4740999-4741115)
chr3 (117-233)||(20017407-20017523)
chr3 (100-228)||(25408767-25408895)
chr3 (142-202)||(37537238-37537298)
chr3 (138-197)||(22534037-22534096)
chr3 (135-202)||(47161017-47161084)
chr3 (135-197)||(6925985-6926047)
chr3 (115-197)||(53876864-53876946)
chr3 (382-434)||(4740761-4740813)
chr3 (117-232)||(6894192-6894307)
chr3 (263-305)||(31050598-31050640)
chr3 (135-204)||(3857614-3857683)
chr3 (139-231)||(14788867-14788959)
[»] scaffold0225 (1 HSPs)
scaffold0225 (135-233)||(6503-6601)
[»] scaffold0047 (1 HSPs)
scaffold0047 (117-233)||(64272-64388)
[»] scaffold0204 (1 HSPs)
scaffold0204 (110-197)||(24516-24603)
[»] scaffold0003 (1 HSPs)
scaffold0003 (133-218)||(290999-291084)
[»] scaffold0795 (1 HSPs)
scaffold0795 (138-202)||(2187-2251)


Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-150; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 20 - 305
Target Start/End: Complemental strand, 37929318 - 37929033
Alignment:
Q  20 cctagcacaaggtgtacataggaaagacaaacaatgtcgatacaatatttataagaggaaactgtacataacgaagcaaaaaagaaataactatcagcct 119  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37929318 cctagcacaaggtgtacataggaaagacaaacaatgtcaaaacaatatttacaagaggaaactgtacataacgaagcaaaaaagaaataactatcagcct 37929219  T
Q  120 atgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatcc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37929218 atgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatcc 37929119  T
Q  220 tatcgaccacctgacttattaagcaaattttgtcgttaaaatgcctgttatttctttctttccaggtttcccaaactgtcgcaaac 305  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37929118 tatcgaccacctgacttattaagcaaatttagtcgttaaaatgcctgttatttctttctttccaggtttcccaaactgtcgcaaac 37929033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 305
Target Start/End: Original strand, 31686316 - 31686601
Alignment:
Q  20 cctagcacaaggtgtacataggaaagacaaacaatgtcgatacaatatttataagaggaaactgtacataacgaagcaaaaaagaaataactatcagcct 119  Q
    ||||||||||||||||||||||||||||||| || ||||| |||||||||| |||||||||||||||| ||  || ||||||||||||||||||  |||     
T  31686316 cctagcacaaggtgtacataggaaagacaaataacgtcgaaacaatatttacaagaggaaactgtacaaaaacaatcaaaaaagaaataactataggcca 31686415  T
Q  120 atgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatcc 219  Q
    | | |||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| |    
T  31686416 acgtctaacaaggtgaacggactaagccgccacccatggtagttaaagggaagagtaggaaatttctccttcaaccacctaaaagcgcgagacttaattc 31686515  T
Q  220 tatcgaccacctgacttattaagcaaattttgtcgttaaaatgcctgttatttctttctttccaggtttcccaaactgtcgcaaac 305  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  31686516 tatcgaccacctgacttattaagcatattttgtcgttaaaatgtctgttatttctttctttccagatttcccaaactgtcgcaaac 31686601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 305 - 498
Target Start/End: Complemental strand, 37928998 - 37928805
Alignment:
Q  305 cgataccaccactgacactaaattgattaaaatgatcttgctcctgagcaggaatgaacactgagatgccaagccatctataaatgaaatgccaaacagc 404  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  37928998 cgataccatcactgacactaaattgattaaaatgatcttgctcctgagcaggaatgaccgctgagatgccaagccatctataaatgaaatgccaaacagc 37928899  T
Q  405 cccaaaaatattacaatgtaaaaacaagtgctgggaagattcgattgaaccacacccagccacacacatccttgagtcacgatcaagaacacca 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37928898 cccaaaaatattacaatgtaaaaacaagtgctgggaagattcgatcgaaccacacccagccacacacatccttgagtcacgatcaagaacacca 37928805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 305 - 498
Target Start/End: Original strand, 31686636 - 31686829
Alignment:
Q  305 cgataccaccactgacactaaattgattaaaatgatcttgctcctgagcaggaatgaacactgagatgccaagccatctataaatgaaatgccaaacagc 404  Q
    |||| |||||||| ||||||||||||||||||||||||||| | |||||| |||||| | |||||||||||||||| ||||||||||||||||||||| |    
T  31686636 cgattccaccactaacactaaattgattaaaatgatcttgcacgtgagcaagaatgaccgctgagatgccaagccacctataaatgaaatgccaaacaac 31686735  T
Q  405 cccaaaaatattacaatgtaaaaacaagtgctgggaagattcgattgaaccacacccagccacacacatccttgagtcacgatcaagaacacca 498  Q
    ||||||||| ||||||  |||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  31686736 cccaaaaattttacaaaataaaaacaagtggtgggaagattcgatcgaaccacacccagccacacacatccttgcgtcacgatcaagaacacca 31686829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 99 - 232
Target Start/End: Original strand, 8462480 - 8462613
Alignment:
Q  99 aaaagaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacc 198  Q
    |||||||||||| || ||||||||   | || ||| ||| |||||||||||||||||||||| || |||||||||| || ||||||| |||||||||||     
T  8462480 aaaagaaataacaattagcctatgttcatcatggtaaacagactaagccaccaaccatgataattgaagggaagagaagcaaatttcgccttcaaccaca 8462579  T
Q  199 taaatgcgagagacttaatcctatcgaccacctg 232  Q
    | |||| ||| ||||||||| |||| ||||||||    
T  8462580 tgaatgtgagtgacttaatcttatcaaccacctg 8462613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 38685874 - 38685794
Alignment:
Q  117 cctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    |||| |||||| || ||||||||||||| |||||||||||||||||||||||||||||||| | | ||||||||| |||||    
T  38685874 cctacgcctaataaagtgaacggactaatccaccaaccatgatagttaaagggaagagtagcatacttcaccttcgaccac 38685794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 102 - 223
Target Start/End: Complemental strand, 5048615 - 5048494
Alignment:
Q  102 agaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaa 201  Q
    ||||| |||||| | |||||||| |  | |||||||||||||||||||||||||||| |||| |||||||| |||   |||||||||||||||||| |||    
T  5048615 agaaaaaactattaacctatgcccagtatggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtatttaatttcaccttcaaccacataa 5048516  T
Q  202 atgcgagagacttaatcctatc 223  Q
    | | ||| | ||||||| ||||    
T  5048515 aagagaggggcttaatcttatc 5048494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 33191203 - 33191268
Alignment:
Q  132 gtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    ||||||||||||||||||||||||||||| || ||||||||||||  |||||||| ||||||||||    
T  33191203 gtgaacggactaagccaccaaccatgataattgaagggaagagtatcaaatttcaacttcaaccac 33191268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 115 - 232
Target Start/End: Original strand, 41255020 - 41255137
Alignment:
Q  115 agcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagactt 214  Q
    |||||||| |||| || | ||||||||||||||||||||||||||||||||||||||||  || | | || |||||||||||| | ||||  ||  ||||    
T  41255020 agcctatgtctaataaagggaacggactaagccaccaaccatgatagttaaagggaagataagcatagttaaccttcaaccacttgaatgttagtaactt 41255119  T
Q  215 aatcctatcgaccacctg 232  Q
    ||||| ||| ||||||||    
T  41255120 aatccgatccaccacctg 41255137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 10617020 - 10616938
Alignment:
Q  115 agcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    ||||||||||||| || | ||||| |||||||||||||||||||||||| || |||| ||||| ||| ||||||| |||||||    
T  10617020 agcctatgcctaataaagcgaacgaactaagccaccaaccatgatagttgaaaggaatagtagcaaacttcacctccaaccac 10616938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 99 - 232
Target Start/End: Complemental strand, 29217070 - 29216938
Alignment:
Q  99 aaaagaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacc 198  Q
    ||||||||||||||| |||||||| | | || ||| |||||||||||| ||| |||||   | |  |||||||||| || |||||||||||||||||||     
T  29217070 aaaagaaataactattagcctatgtccagcatggtaaacggactaagc-acctaccatagcaatggaagggaagagaagcaaatttcaccttcaaccaca 29216972  T
Q  199 taaatgcgagagacttaatcctatcgaccacctg 232  Q
    |||| |||||| | |||||| |||| ||||||||    
T  29216971 taaacgcgagatatttaatcttatccaccacctg 29216938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 7179036 - 7179095
Alignment:
Q  138 ggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    ||||||||||||||| ||||||||||||||||||||||   ||| |||||||||||||||    
T  7179036 ggactaagccaccaatcatgatagttaaagggaagagttacaaacttcaccttcaaccac 7179095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 232
Target Start/End: Original strand, 39435419 - 39435553
Alignment:
Q  97 aaaaaagaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaacca 196  Q
    |||||| ||| |||||| |||||||| | |  ||||||||| |||| | ||||||||||||||| | ||||| ||||| || ||||||| ||||||||||    
T  39435419 aaaaaaaaaaaaactattagcctatgtccagaaaggtgaacagactcaaccaccaaccatgataatgaaagg-aagagaagcaaatttcgccttcaacca 39435517  T
Q  197 cctaaatgcgagagacttaatcctatcgaccacctg 232  Q
    | | ||  |||| ||||||||| |||| ||||||||    
T  39435518 catgaactcgagtgacttaatcttatcaaccacctg 39435553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 38233316 - 38233236
Alignment:
Q  117 cctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    ||||||||||| || ||||| ||||||  ||||||||||||||| |||||||||||||  | | | |||||||||||||||    
T  38233316 cctatgcctaataaagtgaaaggactagaccaccaaccatgataattaaagggaagagatgcatacttcaccttcaaccac 38233236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 21523966 - 21523894
Alignment:
Q  125 taacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    ||||| |||||| | |||||| ||||||||||||||||| ||||||||||  ||||| ||| | |||||||||    
T  21523966 taacatggtgaaggaactaagtcaccaaccatgatagttgaagggaagagatggaaacttcgctttcaaccac 21523894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 202
Target Start/End: Complemental strand, 33282911 - 33282844
Alignment:
Q  135 aacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaa 202  Q
    |||||||||||||||||||||||||| || |  || |||| || ||||||  ||||||||||||||||    
T  33282911 aacggactaagccaccaaccatgataattgagagggagagaagcaaatttttccttcaaccacctaaa 33282844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 20 - 258
Target Start/End: Complemental strand, 38154116 - 38153878
Alignment:
Q  20 cctagcacaaggtgtacataggaaagacaaacaatgtcgatacaatatttataagaggaaactgtacataacgaagcaaaaaagaaataactatcagcct 119  Q
    |||||||||||||||||||||||| ||||||||| ||||| |||||||||| |||||||||||||||| ||  || |||||||||||||||||||| |||    
T  38154116 cctagcacaaggtgtacataggaaggacaaacaacgtcgaaacaatatttacaagaggaaactgtacaaaaacaaacaaaaaagaaataactatcaacct 38154017  T
Q  120 atgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatcc 219  Q
    |||||||||||||||||| ||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38154016 atgcctaacaaggtgaacagactaagccaccatctatggtagttaaagggaagagtaggaaatttcaccttcaaccacctaaaagcgagagacttaatcc 38153917  T
Q  220 tatcgaccacctgacttattaagcaaattttgtcgttaa 258  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  38153916 tatcgaccacctgacttattaagcatattttgtcgttaa 38153878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 34237286 - 34237168
Alignment:
Q  99 aaaagaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacc 198  Q
    ||||||||||| | | |||||||||| |||| |||||| ||||||||||||||||||||||| || ||||||| | || |||||||| ||||||||||||    
T  34237286 aaaagaaataatttttagcctatgcccaacatggtgaaaggactaagccaccaaccatgataattgaagggaataatatgaaatttcgccttcaaccacc 34237187  T
Q  199 taaatgcgagagacttaat 217  Q
     |||  |||||||||||||    
T  34237186 aaaaaacgagagacttaat 34237168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 97 - 229
Target Start/End: Original strand, 17116368 - 17116500
Alignment:
Q  97 aaaaaagaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaacca 196  Q
    ||||||||||||||||| ||| ||| || || | ||| ||| ||||||||||||||||||||||  | |||||||||| || | ||||| ||||||||||    
T  17116368 aaaaaagaaataactattagcttatacccaatatggtaaacagactaagccaccaaccatgataactgaagggaagagaagcatatttcgccttcaacca 17116467  T
Q  197 cctaaatgcgagagacttaatcctatcgaccac 229  Q
    | |||||||||| ||||||||| |||| |||||    
T  17116468 cataaatgcgagtgacttaatcttatcaaccac 17116500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 40616717 - 40616799
Alignment:
Q  115 agcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    ||||||||||||  || |||||||||||||||||||||||| ||||||||||||||||||||| | | |||||||||||||||    
T  40616717 agcctatgcctagtaaagtgaacggactaagccaccaaccaagatagttaaagggaagagtagcatacttcaccttcaaccac 40616799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 141 - 232
Target Start/End: Complemental strand, 27854972 - 27854881
Alignment:
Q  141 ctaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatcctatcgaccacctg 232  Q
    |||||||||||||||||||||||||||||||| |||| | | ||||||||||||||| | ||||  |   ||||||||||||| ||||||||    
T  27854972 ctaagccaccaaccatgatagttaaagggaagggtagcatacttcaccttcaaccacttgaatgttaacaacttaatcctatccaccacctg 27854881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 232
Target Start/End: Complemental strand, 41529519 - 41529389
Alignment:
Q  102 agaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaa 201  Q
    ||||| |||||| | |||||||| | || ||||||||||||||| |||||||||||| | || |||||||| ||   |||||||| |||||||||| |||    
T  41529519 agaaaaaactattaacctatgcccagcatggtgaacggactaagtcaccaaccatgaaaattgaagggaagcgtgttaaatttcatcttcaaccacataa 41529420  T
Q  202 atgcgagagacttaatcctatcgaccacctg 232  Q
    | | ||  ||||||||| |||| ||||||||    
T  41529419 aagagatggacttaatcttatcaaccacctg 41529389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 232
Target Start/End: Complemental strand, 47543542 - 47543425
Alignment:
Q  115 agcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagactt 214  Q
    |||| |||||||| | ||| |||||||||||||| || |||||||| || |||||||||| |  ||| |||  |||||||||| |||| || || |||||    
T  47543542 agccaatgcctaaaatggtaaacggactaagccatcacccatgataattgaagggaagagaactaaacttcgtcttcaaccacgtaaaagcaagcgactt 47543443  T
Q  215 aatcctatcgaccacctg 232  Q
    |||| | |||||||||||    
T  47543442 aatcttgtcgaccacctg 47543425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 115 - 218
Target Start/End: Complemental strand, 42017903 - 42017800
Alignment:
Q  115 agcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagactt 214  Q
    |||||||||| ||||  |||||||||||||||||||| ||||||||||| || |  ||  |||||| |||| ||||||||||| || |||  || |||||    
T  42017903 agcctatgcccaacatagtgaacggactaagccaccatccatgatagttgaaagagagcttaggaagtttcgccttcaaccacatatatgaaagtgactt 42017804  T
Q  215 aatc 218  Q
    ||||    
T  42017803 aatc 42017800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 232
Target Start/End: Complemental strand, 12092769 - 12092675
Alignment:
Q  138 ggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatcctatcgaccacctg 232  Q
    |||||||||||| | ||||||||||| ||||||||||  | ||||||| ||||||||||| | || |  || ||||||||| |||| ||||||||    
T  12092769 ggactaagccactatccatgatagtttaagggaagagaggaaaatttcgccttcaaccacatgaaggaaagtgacttaatcttatctaccacctg 12092675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 38343060 - 38342998
Alignment:
Q  135 aacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    |||||| |||| |||||||||||||||||||||||||||||   ||  |||||||||||||||    
T  38343060 aacggattaagtcaccaaccatgatagttaaagggaagagttacaagcttcaccttcaaccac 38342998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 434
Target Start/End: Original strand, 23710755 - 23710811
Alignment:
Q  378 ccatctataaatgaaatgccaaacagccccaaaaatattacaatgtaaaaacaagtg 434  Q
    |||||||||||| ||||||||||||| ||| |||| |||||||||||| || |||||    
T  23710755 ccatctataaataaaatgccaaacagaccccaaaaaattacaatgtaacaataagtg 23710811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 434
Target Start/End: Complemental strand, 47543236 - 47543184
Alignment:
Q  382 ctataaatgaaatgccaaacagccccaaaaatattacaatgtaaaaacaagtg 434  Q
    ||||||||||| ||||||||||  ||||||| ||||||||||||||| |||||    
T  47543236 ctataaatgaagtgccaaacagaaccaaaaaaattacaatgtaaaaataagtg 47543184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 238
Target Start/End: Original strand, 4997971 - 4998049
Alignment:
Q  160 agttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatcctatcgaccacctgacttat 238  Q
    |||| ||| ||| ||||| ||||||| ||||||||||| |||| | ||| ||||||||| |||| ||||||||| ||||    
T  4997971 agttgaagagaatagtagtaaatttcgccttcaaccacataaaagtgagggacttaatcttatccaccacctgaattat 4998049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 26569823 - 26569741
Alignment:
Q  115 agcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    |||| ||||| ||||  ||||||||||  |||||||| |||||||| || |||||||||| || || |||| |||||||||||    
T  26569823 agccaatgcccaacatagtgaacggacatagccaccatccatgataattgaagggaagagaagcaagtttcgccttcaaccac 26569741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 27076662 - 27076604
Alignment:
Q  141 ctaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacct 199  Q
    ||||||||||||||||||||||| ||||||| ||  ||||| ||| ||||| |||||||    
T  27076662 ctaagccaccaaccatgatagttgaagggaatagatggaaacttcgccttctaccacct 27076604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 27201639 - 27201697
Alignment:
Q  141 ctaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacct 199  Q
    ||||||||||||||||||||||| ||||||| ||  ||||| ||| ||||| |||||||    
T  27201639 ctaagccaccaaccatgatagttgaagggaatagatggaaacttcgccttctaccacct 27201697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 148; Significance: 7e-78; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 22 - 281
Target Start/End: Original strand, 5958217 - 5958475
Alignment:
Q  22 tagcacaaggtgtacataggaaagacaaacaatgtcgatacaatatttataagaggaaactgtacataacgaagcaaaaaagaaataactatcagcctat 121  Q
    ||||| |||||||| ||||||||||||||||| ||||| ||| |||||| ||||| |||||||||| ||   |  ||||||||||||| |||||||||||    
T  5958217 tagcataaggtgtatataggaaagacaaacaaagtcgaaacagtatttacaagagaaaactgtacaaaaatcat-aaaaaagaaataattatcagcctat 5958315  T
Q  122 gcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatccta 221  Q
    |||||||||||| || | | |||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||    
T  5958316 gcctaacaaggtaaatgaattaagccaccatccatgatagttaaagggaaaagtagcaaatttcaccttcaaccacctaaaaacgagagacttaatccta 5958415  T
Q  222 tcgaccacctgacttattaagcaaattttgtcgttaaaatgcctgttatttctttctttc 281  Q
    |||| ||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||    
T  5958416 tcgatcacctgatttattaagcaaattttgtcgttaaaatgtctgctatttctttctttc 5958475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 103 - 233
Target Start/End: Original strand, 34703453 - 34703583
Alignment:
Q  103 gaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaa 202  Q
    ||||||||||| |||||||| | |||| |||||||| ||| ||||||||||||||| |||||||||||||||| | | ||||| ||||||||||| ||||    
T  34703453 gaaataactattagcctatgtccaacatggtgaacgaacttagccaccaaccatgaaagttaaagggaagagttgcatatttcgccttcaaccacataaa 34703552  T
Q  203 tgcgagagacttaatcctatcgaccacctga 233  Q
     | ||| ||||||||| |||| |||||||||    
T  34703553 agtgagggacttaatcttatcaaccacctga 34703583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 368 - 498
Target Start/End: Original strand, 36098891 - 36099022
Alignment:
Q  368 agatgccaagccatctataaatgaaatgccaaacag-ccccaaaaatattacaatgtaaaaacaagtgctgggaagattcgattgaaccacacccagcca 466  Q
    ||||||||||||| ||||| || || |||||||| | |||||||| |||||||||||||||| |||||||| || ||||| | |||| ||||||| ||||    
T  36098891 agatgccaagccacctatatataaagtgccaaactgaccccaaaagtattacaatgtaaaaataagtgctgagatgattcaactgaaacacaccctgcca 36098990  T
Q  467 cacacatccttgagtcacgatcaagaacacca 498  Q
    |||| | |||||| |||||| |||||||||||    
T  36098991 cacaaaaccttgaatcacgaccaagaacacca 36099022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 99 - 229
Target Start/End: Complemental strand, 44675227 - 44675097
Alignment:
Q  99 aaaagaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacc 198  Q
    ||||||||||||||| || ||||||| |||| | | |||||||||||||||||||||||||| || |||||||| | || ||||||| |||||||||||     
T  44675227 aaaagaaataactattagtctatgcccaacatgataaacggactaagccaccaaccatgataattgaagggaagggaagcaaatttcgccttcaaccaca 44675128  T
Q  199 taaatgcgagagacttaatcctatcgaccac 229  Q
    | ||||| || | ||||||| |||| |||||    
T  44675127 tgaatgcaagtggcttaatcttatcaaccac 44675097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 135 - 232
Target Start/End: Complemental strand, 12688274 - 12688177
Alignment:
Q  135 aacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatcctatcgaccacctg 232  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| |||| |  ||  |||||||| |||| ||||||||    
T  12688274 aacggactaagccaccatccatgatagttaaagggaagagttggaaacttcaccttcaaccacttaaaagttagcaacttaatcttatccaccacctg 12688177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 217
Target Start/End: Original strand, 36098593 - 36098705
Alignment:
Q  105 aataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatg 204  Q
    ||||||| | |||||||||| |||| ||||||||||||||||||||| |||||||| || |||||||| |||   |||||  |||||| ||||||||| |    
T  36098593 aataactcttagcctatgcccaacatggtgaacggactaagccaccagccatgataattgaagggaagtgtaatgaattttgccttcagccacctaaagg 36098692  T
Q  205 cgagagacttaat 217  Q
    |||||||||||||    
T  36098693 cgagagacttaat 36098705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 110 - 233
Target Start/End: Original strand, 6723689 - 6723812
Alignment:
Q  110 ctatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgaga 209  Q
    |||| ||||||| || | || ||||||||||||||||||||| |||||| | || || ||| |||||  ||| ||||||||||||||| |||| | |||     
T  6723689 ctattagcctattccaagcatggtgaacggactaagccaccatccatgaaaattgaaaggaggagtattaaacttcaccttcaaccacataaaagtgagg 6723788  T
Q  210 gacttaatcctatcgaccacctga 233  Q
    ||||||||| | ||||||||||||    
T  6723789 gacttaatcttgtcgaccacctga 6723812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 5411835 - 5411773
Alignment:
Q  135 aacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    |||||||||||||| ||||||||||||||||||||||||||   ||| |||||||||||||||    
T  5411835 aacggactaagccaacaaccatgatagttaaagggaagagttacaaacttcaccttcaaccac 5411773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 108 - 233
Target Start/End: Original strand, 10686161 - 10686286
Alignment:
Q  108 aactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcga 207  Q
    |||||| |||||||||| ||||  |||||||||| || |||||||||||||   |||| ||||||| ||| ||| ||| |||||||||||  |||||  |    
T  10686161 aactattagcctatgcccaacattgtgaacggacaaaaccaccaaccatgaagattaatgggaagattagtaaacttcgccttcaaccacgcaaatgtaa 10686260  T
Q  208 gagacttaatcctatcgaccacctga 233  Q
    | ||||||||| |||| |||||||||    
T  10686261 gggacttaatcttatccaccacctga 10686286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 28442130 - 28442210
Alignment:
Q  117 cctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    ||||| ||||| || || || |||||||||||||||||||||||||||||||||||||    ||| |||||||||||||||    
T  28442130 cctattcctaataaagtaaatggactaagccaccaaccatgatagttaaagggaagagagacaaacttcaccttcaaccac 28442210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 214
Target Start/End: Complemental strand, 26260867 - 26260768
Alignment:
Q  115 agcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagactt 214  Q
    |||| ||||| |||| ||| || |||||||||||||| |||||||| || |||||||||| || ||| ||| ||||||||||| |||| || ||||||||    
T  26260867 agccaatgcccaacatggtaaatggactaagccaccacccatgataattgaagggaagagaagcaaacttcgccttcaaccacgtaaaagcaagagactt 26260768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 132 - 217
Target Start/End: Complemental strand, 4889549 - 4889464
Alignment:
Q  132 gtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaat 217  Q
    ||||| |||||||| ||||| |||||||||||||||||||||| ||| || ||| |||| |||||| | ||||| || ||||||||    
T  4889549 gtgaatggactaagtcaccacccatgatagttaaagggaagagaagggaacttcgccttgaaccacatgaatgcaagcgacttaat 4889464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 45718423 - 45718367
Alignment:
Q  141 ctaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    |||||||||||||||||||| |||||||||||||| | |||||||| ||||| ||||    
T  45718423 ctaagccaccaaccatgataattaaagggaagagtggcaaatttcatcttcagccac 45718367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 9484977 - 9484879
Alignment:
Q  99 aaaagaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    |||||||||||| |  || | ||||| ||||  |||||| |||||| ||||||||||||||| || |||||||||| |  ||||||| |||||||||||    
T  9484977 aaaagaaataacaactagtcgatgcccaacattgtgaactgactaaaccaccaaccatgataattgaagggaagagaaacaaatttcgccttcaaccac 9484879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 233
Target Start/End: Complemental strand, 27568475 - 27568381
Alignment:
Q  139 gactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatcctatcgaccacctga 233  Q
    ||||||||||||| ||||| || || |||||||||| |  ||||||  ||||||||||| |||| || |||||||||||| | || |||||||||    
T  27568475 gactaagccaccacccatggtaattgaagggaagagaaacaaattttgccttcaaccacgtaaaagcaagagacttaatcgtttctaccacctga 27568381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 48973747 - 48973685
Alignment:
Q  135 aacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    ||||||||||||||||| |||||||| ||||||||||||||   ||| |||||||| ||||||    
T  48973747 aacggactaagccaccacccatgataattaaagggaagagttacaaacttcacctttaaccac 48973685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 28400594 - 28400529
Alignment:
Q  132 gtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    ||||| |||||||||||||| |||||||||||||| ||||||||   ||| |||||||||| ||||    
T  28400594 gtgaatggactaagccaccacccatgatagttaaaaggaagagtgacaaacttcaccttcatccac 28400529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 223
Target Start/End: Original strand, 25392289 - 25392413
Alignment:
Q  99 aaaagaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacc 198  Q
    ||||||||||||||| ||  ||| || | || ||| |||| |||||||||| ||| |||||| || ||||||| |  || ||| ||| |||||||||||     
T  25392289 aaaagaaataactattagtttattcccatcatggtaaacgaactaagccactaacaatgataattgaagggaaaataagaaaacttcgccttcaaccaca 25392388  T
Q  199 taaatgcgagagacttaatcctatc 223  Q
    || ||||||| ||||||||| ||||    
T  25392389 tacatgcgagcgacttaatcttatc 25392413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 434
Target Start/End: Complemental strand, 32159883 - 32159831
Alignment:
Q  382 ctataaatgaaatgccaaacagccccaaaaatattacaatgtaaaaacaagtg 434  Q
    ||||||||||| ||||||||||  ||||||| ||||||||||||||| |||||    
T  32159883 ctataaatgaagtgccaaacagatccaaaaaaattacaatgtaaaaataagtg 32159831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 52251438 - 52251399
Alignment:
Q  134 gaacggactaagccaccaaccatgatagttaaagggaaga 173  Q
    |||||||||||||||||||||||||||||| | |||||||    
T  52251438 gaacggactaagccaccaaccatgatagttgaggggaaga 52251399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 50039759 - 50039686
Alignment:
Q  117 cctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaa 193  Q
    ||||||||| | || ||||||||||||| |||||||||   ||| |||||||||||||||| | | |||||||||||    
T  50039759 cctatgcctcataaagtgaacggactaatccaccaacc---ataattaaagggaagagtagcatacttcaccttcaa 50039686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 428
Target Start/End: Original strand, 40708729 - 40708774
Alignment:
Q  383 tataaatgaaatgccaaacagccccaaaaatattacaatgtaaaaa 428  Q
    |||||||||| |||||||| | ||||||| ||||||||||||||||    
T  40708729 tataaatgaagtgccaaacggacccaaaactattacaatgtaaaaa 40708774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 23997205 - 23997141
Alignment:
Q  138 ggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaa 202  Q
    ||||||||||| || |||||||| ||||||| ||||| |   | |||||||||||||||||||||    
T  23997205 ggactaagccatcagccatgataattaaaggaaagagaaacgagtttcaccttcaaccacctaaa 23997141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 42450626 - 42450694
Alignment:
Q  131 ggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacct 199  Q
    |||||||||| ||||||||||||| ||||| || |||| |||||  | | |||||||| ||||||||||    
T  42450626 ggtgaacggattaagccaccaaccgtgataattgaaggcaagagatgtacatttcaccctcaaccacct 42450694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 52626599 - 52626563
Alignment:
Q  138 ggactaagccaccaaccatgatagttaaagggaagag 174  Q
    ||||||||||||||||||||||| || ||||||||||    
T  52626599 ggactaagccaccaaccatgataattgaagggaagag 52626563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 5e-54; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 28 - 284
Target Start/End: Original strand, 33645730 - 33645988
Alignment:
Q  28 aaggtgtacataggaaagacaaacaatgtcgatacaatatttataagaggaaa--ctgtacataacgaagcaaaaaagaaataactatcagcctatgcct 125  Q
    ||||||||||||||| | | |||||||||||| |||||||||| |||||||||  |||||||  | | | |||||||||||||||||||||||||||       
T  33645730 aaggtgtacataggacatataaacaatgtcgaaacaatatttacaagaggaaaaactgtacaagaagcaacaaaaaagaaataactatcagcctatgttc 33645829  T
Q  126 aacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatcctatcga 225  Q
    || | ||||||| |||||| |||||||||||| || || || |||||||||| ||||||  |||||||||||||||||||||| ||||||||| |||| |    
T  33645830 aaaatggtgaacagactaacccaccaaccatggtaattgaaaggaagagtagcaaatttttccttcaaccacctaaatgcgagcgacttaatcttatcaa 33645929  T
Q  226 ccacctgacttattaagcaaattttgtcgttaaaatgcctgttatttctttctttccag 284  Q
    ||| |||||||||  ||||   ||| |||||||||||| ||||||||||||||||||||    
T  33645930 ccatctgacttatcgagcattctttatcgttaaaatgcatgttatttctttctttccag 33645988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 99 - 229
Target Start/End: Complemental strand, 27009330 - 27009200
Alignment:
Q  99 aaaagaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacc 198  Q
    ||||||||||||||| |||||||| | |  | ||| ||||||||||||||||||||||| || || |||||||||| || ||||||| ||||||| ||||    
T  27009330 aaaagaaataactattagcctatgtccagtatggtaaacggactaagccaccaaccatggtaattgaagggaagagaagtaaatttcgccttcaatcacc 27009231  T
Q  199 taaatgcgagagacttaatcctatcgaccac 229  Q
    |||| ||||||||||||||| |||| |||||    
T  27009230 taaaagcgagagacttaatcttatcaaccac 27009200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 103 - 305
Target Start/End: Complemental strand, 30505843 - 30505641
Alignment:
Q  103 gaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaa 202  Q
    ||||||||||| |||||||||| |||| ||| ||| |||||| ||||||||||||||| || |||||||| | || ||||||| |||||||| |  ||||    
T  30505843 gaaataactattagcctatgcccaacatggtaaacagactaaaccaccaaccatgataattgaagggaagtgaagaaaatttctccttcaactagataaa 30505744  T
Q  203 tgcgagagacttaatcctatcgaccacctgacttattaagcaaattttgtcgttaaaatgcctgttatttctttctttccaggtttcccaaactgtcgca 302  Q
    ||||||| |||||||| |||| ||||| ||  ||||  || |  ||||||| || ||  ||||||||||||||||||||||  |||| ||||| || |||    
T  30505743 tgcgagaaacttaatcttatcaaccacatgtattatcgagtattttttgtctttgaatagcctgttatttctttctttccaaatttctcaaacagtagca 30505644  T
Q  303 aac 305  Q
    |||    
T  30505643 aac 30505641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 104 - 289
Target Start/End: Original strand, 27708158 - 27708343
Alignment:
Q  104 aaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaat 203  Q
    |||||||||| |||||||||| |  | ||||||| || |||||||||||||||||   || ||||||||||||| ||||||| |||| |||||| ||||     
T  27708158 aaataactattagcctatgcccagtacggtgaacagattaagccaccaaccatgaagattgaagggaagagtagcaaatttcgcctttaaccacgtaaaa 27708257  T
Q  204 gcgagagacttaatcctatcgaccacctgacttattaagcaaattttgtcgttaaaatgcctgttatttctttctttccaggtttc 289  Q
    ||||| ||||||||| |||| ||||||||| |||  |||||  |||||||  ||||    ||||||||||||||||||||| ||||    
T  27708258 gcgagcgacttaatcttatcaaccacctgaattaccaagcatgttttgtctgtaaataatctgttatttctttctttccagatttc 27708343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 103 - 292
Target Start/End: Complemental strand, 39117546 - 39117357
Alignment:
Q  103 gaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaa 202  Q
    |||||||| || |||||||| | ||||  |||||||||||||||||||| |||||  |||| |||| |||||||| ||||||| || |||||||| ||||    
T  39117546 gaaataacaattagcctatgtccaacattgtgaacggactaagccaccagccatgtaagttgaaggaaagagtagtaaatttctccctcaaccacataaa 39117447  T
Q  203 tgcgagagacttaatcctatcgaccacctgacttattaagcaaattttgtcgttaaaatgcctgttatttctttctttccaggtttccca 292  Q
    || ||| ||||||||| |||| ||||||||| | |   |||||  ||||  | ||||   |||||||||||||||||||||| |||||||    
T  39117446 tgtgagggacttaatcttatccaccacctgagtcaccgagcaagatttgatggtaaacaacctgttatttctttctttccagatttccca 39117357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 841531 - 841613
Alignment:
Q  115 agcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    ||||||||||||  || |||||| ||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||    
T  841531 agcctatgcctagtaaagtgaacagactaagccaccaaccatgatagttaaagggaagagtagcatacttcaccttcaaccac 841613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 99 - 229
Target Start/End: Complemental strand, 9840898 - 9840768
Alignment:
Q  99 aaaagaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacc 198  Q
    ||||||||||||||| ||| |||||| | || |||||||||| ||||||||||||||||||| || || |||||||||| ||||||  ||||||| |||     
T  9840898 aaaagaaataactattagcatatgcccatcatggtgaacggattaagccaccaaccatgataattgaatggaagagtagcaaattttgccttcaatcaca 9840799  T
Q  199 taaatgcgagagacttaatcctatcgaccac 229  Q
    |||| ||||| || |||||| |||| |||||    
T  9840798 taaaagcgagcgatttaatcttatcaaccac 9840768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 104 - 305
Target Start/End: Original strand, 37738057 - 37738259
Alignment:
Q  104 aaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttca-accacctaaa 202  Q
    |||||||||| |||||||||| || | ||||||||||||||||||||| |||||| ||||||||||||||||||  |||||| ||||||  |||| | ||    
T  37738057 aaataactattagcctatgcccaaaatggtgaacggactaagccaccagccatgaaagttaaagggaagagtagtgaatttcgccttcaggccacatgaa 37738156  T
Q  203 tgcgagagacttaatcctatcgaccacctgacttattaagcaaattttgtcgttaaaatgcctgttatttctttctttccaggtttcccaaactgtcgca 302  Q
     | ||| ||||||||| ||||  ||||||||  | |  ||||  |||| ||  ||||  | ||||||||||||||||||||| ||||||| || || |||    
T  37738157 agtgagcgacttaatcttatcagccacctgaagtgtcgagcatgttttatccataaatagtctgttatttctttctttccagatttcccagacagttgca 37738256  T
Q  303 aac 305  Q
    |||    
T  37738257 aac 37738259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 132 - 232
Target Start/End: Complemental strand, 24739916 - 24739816
Alignment:
Q  132 gtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatcctatcgaccacct 231  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| | | ||||||||||||||| | ||||  |   ||||||||||||| |||||||    
T  24739916 gtgaacggactaagccaccaaccatgatagttaaagggaagggtagcatacttcaccttcaaccacttgaatgttaacaacttaatcctatccaccacct 24739817  T
Q  232 g 232  Q
    |    
T  24739816 g 24739816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 139 - 295
Target Start/End: Original strand, 44735982 - 44736138
Alignment:
Q  139 gactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatcctatcgaccacctgacttat 238  Q
    ||||||||||| |||||||| | || ||||||||||||  ||| ||| ||||||||||| |||| | ||| ||||||||| | ||||||||||||  ||     
T  44735982 gactaagccactaaccatgaaaattgaagggaagagtattaaacttcgccttcaaccacataaaagtgagggacttaatcttgtcgaccacctgaactac 44736081  T
Q  239 taagcaaattttgtcgttaaaatgcctgttatttctttctttccaggtttcccaaac 295  Q
      |||| ||||||||  |||||  ||||||||||||||||||| |  ||||||||||    
T  44736082 cgagcatattttgtctgtaaaaaacctgttatttctttctttctaaatttcccaaac 44736138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 232
Target Start/End: Original strand, 36176612 - 36176741
Alignment:
Q  102 agaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaa 201  Q
    |||||||||||| ||||||| || |||| ||| || |||||||  |||||||||||||| || ||| |||||| || |||||||||| | |||||| |||    
T  36176612 agaaataactattagcctatacccaacatggtaaatggactaaaacaccaaccatgataattgaagagaagagaagcaaatttcaccat-aaccacataa 36176710  T
Q  202 atgcgagagacttaatcctatcgaccacctg 232  Q
    ||| ||| ||||||||| |||| ||||||||    
T  36176711 atgtgagcgacttaatcttatcaaccacctg 36176741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 18766769 - 18766683
Alignment:
Q  132 gtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatc 218  Q
    ||||||||| |||||||||| |||||| | |||||||||||| ||| ||||||| || |||||||| |||||| ||| |||||||||    
T  18766769 gtgaacggattaagccaccagccatgaaaattaaagggaagattagtaaatttcgccatcaaccacataaatgtgagggacttaatc 18766683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 40426909 - 40426970
Alignment:
Q  115 agcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagta 176  Q
    |||| |||||||  || ||||||||| |||||||||||||||||||||||||||||||||||    
T  40426909 agccgatgcctagtaaagtgaacggattaagccaccaaccatgatagttaaagggaagagta 40426970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 135 - 229
Target Start/End: Complemental strand, 31640335 - 31640241
Alignment:
Q  135 aacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatcctatcgaccac 229  Q
    ||||||||||||||||| ||||| || || | |||||||| || ||||||| ||||||||||| |||| || || ||||||||| |||| |||||    
T  31640335 aacggactaagccaccatccatggtaattgaggggaagagaagcaaatttcgccttcaaccacgtaaaagcaagtgacttaatcttatctaccac 31640241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 107 - 292
Target Start/End: Complemental strand, 35590347 - 35590162
Alignment:
Q  107 taactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcg 206  Q
    ||||||| |||||||||| || |  | ||| || ||||||||||||||||||||||| |||||||||   ||| | ||| |||||| |||||| || |      
T  35590347 taactattagcctatgcccaaaatagagaaggggctaagccaccaaccatgatagttgaagggaagacacggatacttcgccttcagccacctgaaagtc 35590248  T
Q  207 agagacttaatcctatcgaccacctgacttattaagcaaattttgtcgttaaaatgcctgttatttctttctttccaggtttccca 292  Q
    ||  |||||||  |||| ||||||||| | ||| ||||   |||| | || |||  |||||||||||||||||||||| |||||||    
T  35590247 agcaacttaattttatcaaccacctgaataattgagcattctttgccattgaaaaacctgttatttctttctttccagatttccca 35590162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 1997682 - 1997762
Alignment:
Q  117 cctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    ||||||||||| || ||||| ||||||  ||||||||||||||| |||||||||||||  | | | |||||||||||||||    
T  1997682 cctatgcctaataaagtgaaaggactattccaccaaccatgataattaaagggaagagatgcatacttcaccttcaaccac 1997762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 431
Target Start/End: Complemental strand, 30505541 - 30505480
Alignment:
Q  370 atgccaagccatctataaatgaaatgccaaacagccccaaaaatattacaatgtaaaaacaa 431  Q
    ||||| ||| |||||||||| |||| ||| |||| ||||||||||||||||||||| |||||    
T  30505541 atgcccagctatctataaataaaataccagacagacccaaaaatattacaatgtaagaacaa 30505480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 8090584 - 8090525
Alignment:
Q  115 agcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagag 174  Q
    |||| |||||||| | ||| ||||||||||||||||| |||||||| || ||||||||||    
T  8090584 agccaatgcctaaaatggtaaacggactaagccaccacccatgataattgaagggaagag 8090525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 38409083 - 38409024
Alignment:
Q  135 aacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaac 194  Q
    |||||||| | ||||||||||||||| || |||||||| ||||  |||||||||||||||    
T  38409083 aacggactgaaccaccaaccatgataattgaagggaagtgtagcgaatttcaccttcaac 38409024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 45131132 - 45131191
Alignment:
Q  138 ggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    |||||||||||||| |||||||| || |||||||||| || | ||||| |||||||||||    
T  45131132 ggactaagccaccacccatgataattgaagggaagagaagcatatttccccttcaaccac 45131191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 9933090 - 9933156
Alignment:
Q  131 ggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    |||||||||| ||||||||||||| || |||||||| | |||||  | |||||||||| ||||||||    
T  9933090 ggtgaacggattaagccaccaaccgtggtagttaaaagcaagagaggtaaatttcaccctcaaccac 9933156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 18948895 - 18948827
Alignment:
Q  131 ggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacct 199  Q
    |||||||||| ||||||||||||| ||||| || |||| |||||  | | |||||||| ||||||||||    
T  18948895 ggtgaacggattaagccaccaaccgtgataattgaaggcaagagatgaacatttcaccctcaaccacct 18948827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Original strand, 27708467 - 27708523
Alignment:
Q  378 ccatctataaatgaaatgccaaacagccccaaaaatattacaatgtaaaaacaagtg 434  Q
    |||||||||||| ||||| || |||  |||||||| |||||||||||| ||||||||    
T  27708467 ccatctataaattaaatggcagacaaacccaaaaaaattacaatgtaataacaagtg 27708523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 115 - 232
Target Start/End: Complemental strand, 10552754 - 10552637
Alignment:
Q  115 agcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagactt 214  Q
    ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| | ||||  |   ||||    
T  10552754 agcctatgcctactaaagtgaacggactaagccaccaaccatgatagttaaagggaagagtagcatacttcaccttcaaccacttgaatgttaacaactt 10552655  T
Q  215 aatcctatcgaccacctg 232  Q
    ||||||||| ||||||||    
T  10552654 aatcctatccaccacctg 10552637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 102 - 284
Target Start/End: Complemental strand, 29969973 - 29969791
Alignment:
Q  102 agaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaa 201  Q
    |||||||||||| || ||||| ||| || |||||||||||||||||||||||||| | |||  ||||||||||||| ||||||| ||||||||||| |||    
T  29969973 agaaataactattagtctatgtctatcatggtgaacggactaagccaccaaccataaaagtagaagggaagagtagtaaatttcgccttcaaccacataa 29969874  T
Q  202 atgcgagagacttaatcctatcgaccacctgacttattaagcaaattttgtcgttaaaatgcctgttatttctttctttccag 284  Q
    | |   | |||||| || |||| ||||||||   |||  ||||  |||| ||  ||||| |||||||||||||||||||||||    
T  29969873 aagtatgggacttattcttatcaaccacctgtaatatcgagcatgttttatctgtaaaaagcctgttatttctttctttccag 29969791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 100 - 229
Target Start/End: Original strand, 25130409 - 25130538
Alignment:
Q  100 aaagaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacct 199  Q
    |||| ||||||||||| | |||||| || ||  | ||||||||||||||||||||||||||||| | || |||||||| ||||||| ||||||||||| |    
T  25130409 aaaggaataactatcatcatatgcccaataatataaacggactaagccaccaaccatgatagttgagggaaagagtagcaaatttctccttcaaccacat 25130508  T
Q  200 aaatgcgagagacttaatcctatcgaccac 229  Q
     || ||||| ||||| ||| ||||||||||    
T  25130509 gaaagcgagggacttgatcttatcgaccac 25130538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 13137196 - 13137112
Alignment:
Q  115 agcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacct 199  Q
    ||||||||||||  ||||| |||||||||||||||||||||||||| || |||  |||||||| |||||||||||||||||||||    
T  13137196 agcctatgcctagtaaggtaaacggactaagccaccaaccatgataattgaagaaaagagtagcaaatttcaccttcaaccacct 13137112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 102 - 305
Target Start/End: Complemental strand, 20510522 - 20510319
Alignment:
Q  102 agaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaa 201  Q
    ||||| |||||| | |||||||| | || |||||||||||||||||||||||||||| | || |||||||| ||   ||||||||||||||||||| |||    
T  20510522 agaaaaaactattaacctatgcccagcatggtgaacggactaagccaccaaccatgaaaattgaagggaagcgtgttaaatttcaccttcaaccacataa 20510423  T
Q  202 atgcgagagacttaatcctatcgaccacctgacttattaagcaaattttgtcgttaaaatgcctgttatttctttctttccaggtttcccaaactgtcgc 301  Q
    | | ||  ||||||||| |||| ||||||||   ||   ||||| |||| ||  |||| ||| |||| ||||||||||||||| | ||| | ||||| ||    
T  20510422 aagagatggacttaatcttatcaaccacctgtaataccgagcaagttttatccgtaaattgcatgttgtttctttctttccagatctcctagactgtagc 20510323  T
Q  302 aaac 305  Q
    ||||    
T  20510322 aaac 20510319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 99 - 305
Target Start/End: Complemental strand, 52578116 - 52577910
Alignment:
Q  99 aaaagaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacc 198  Q
    |||||||||||| |  ||||||||||||  | ||  |||| ||||||||||||||||||||| || ||||||||||    ||| |||||||||||||||     
T  52578116 aaaagaaataaccactagcctatgcctagaatggcaaacgcactaagccaccaaccatgataattgaagggaagagatacaaacttcaccttcaaccacg 52578017  T
Q  199 taaatgcgagagacttaatcctatcgaccacctgacttattaagcaaattttgtcgttaaaatgcctgttatttctttctttccaggtttcccaaactgt 298  Q
    |||| || || ||||||||| |||| | |||||||   |   |||||| ||| || || ||| |||||||||||||||| |||||| ||||||| || ||    
T  52578016 taaaagcaagggacttaatcttatctatcacctgaagaaccgagcaaactttatcattgaaaagcctgttatttctttccttccagatttcccacaccgt 52577917  T
Q  299 cgcaaac 305  Q
     ||||||    
T  52577916 agcaaac 52577910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 9831483 - 9831382
Alignment:
Q  132 gtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatcctatcgaccacct 231  Q
    |||||||||||||||||||| |||||||| || |||||||| |||   |||||| |||||||||||||||| || |||||||| ||| |||| |||||||    
T  9831483 gtgaacggactaagccaccagccatgataattgaagggaagtgtaacgaatttcgccttcaaccacctaaaagcaagagacttgatcttatccaccacct 9831384  T
Q  232 ga 233  Q
    ||    
T  9831383 ga 9831382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 104 - 283
Target Start/End: Original strand, 30972360 - 30972539
Alignment:
Q  104 aaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaat 203  Q
    |||||||||| |||||||||| || |  |||||  ||||||||||||| ||||||||||| |||||||||| |||||||||| |||||| |||| | ||     
T  30972360 aaataactattagcctatgccaaaaatagtgaaatgactaagccaccagccatgatagttgaagggaagagaaggaaatttcgccttcagccacatgaaa 30972459  T
Q  204 gcgagagacttaatcctatcgaccacctgacttattaagcaaattttgtcgttaaaatgcctgttatttctttctttcca 283  Q
    |  || ||||||||  |||| ||||||||  | ||| ||||   |||| | |||||  || |||||||||||||||||||    
T  30972460 gtcagcgacttaattttatcaaccacctgcataattgagcactctttgccattaaagagcatgttatttctttctttcca 30972539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 40153925 - 40153992
Alignment:
Q  132 gtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacct 199  Q
    ||||||| | |||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||    
T  40153925 gtgaacgtattaagccaccaactatgatagttaaagggaagattagcaaatttcaccttcaaccacct 40153992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 99 - 305
Target Start/End: Complemental strand, 22653419 - 22653213
Alignment:
Q  99 aaaagaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacc 198  Q
    ||||||||||||||  ||||||| |  | || ||| ||| |||||||||||||||||||||| || |||| ||    || ||||||| |||||||||||     
T  22653419 aaaagaaataactaatagcctatactcagcatggtaaacagactaagccaccaaccatgataattgaaggtaatgtaagcaaatttcgccttcaaccaca 22653320  T
Q  199 taaatgcgagagacttaatcctatcgaccacctgacttattaagcaaattttgtcgttaaaatgcctgttatttctttctttccaggtttcccaaactgt 298  Q
    |||||| ||| || |||||| |||| ||||||||  |||   |||| | |||||| || ||  ||||||||||||||||||| ||  ||||||||||| |    
T  22653319 taaatgtgagcgatttaatcttatcaaccacctgtattaccgagcatagtttgtctttgaatagcctgttatttctttcttttcaaatttcccaaactat 22653220  T
Q  299 cgcaaac 305  Q
     ||||||    
T  22653219 agcaaac 22653213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 117 - 232
Target Start/End: Original strand, 11131172 - 11131287
Alignment:
Q  117 cctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaa 216  Q
    ||||| ||||| || || || ||||||||||||||||||||||| ||||||||||||||   ||| |||||||||||||||  ||| |  ||  ||||||    
T  11131172 cctattcctaataaagtaaaaggactaagccaccaaccatgataattaaagggaagagtgacaaacttcaccttcaaccactgaaaagatagcaacttaa 11131271  T
Q  217 tcctatcgaccacctg 232  Q
    ||||||| ||||||||    
T  11131272 tcctatctaccacctg 11131287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 27269973 - 27270071
Alignment:
Q  99 aaaagaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    |||| |||||||||| ||| |||| | || |  ||||| ||||||||||||||||||||||| || |||||||| | |||||||||| |||||||||||    
T  27269973 aaaacaaataactattagcatatgtccaaaattgtgaatggactaagccaccaaccatgataattgaagggaagtgaaggaaatttcgccttcaaccac 27270071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 42527325 - 42527407
Alignment:
Q  115 agcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    ||||||||| ||  || ||||||||| ||||||||||||||||||| ||  | |||||||||| |||||||||||||||||||    
T  42527325 agcctatgcttagtaatgtgaacggattaagccaccaaccatgataattggaaggaagagtagaaaatttcaccttcaaccac 42527407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 54870801 - 54870861
Alignment:
Q  115 agcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagt 175  Q
    ||||||||||||  || || |||||||||||||||||||||||||| ||||||||||||||    
T  54870801 agcctatgcctagtaaagtaaacggactaagccaccaaccatgataattaaagggaagagt 54870861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 367 - 498
Target Start/End: Complemental strand, 9831214 - 9831083
Alignment:
Q  367 gagatgccaagccatctataaatgaaatgccaaacagccccaaaaatattacaatgtaaaaacaagtgctgggaagattcgattgaaccacacccagcca 466  Q
    |||||||||||||| |||||||| || ||||||||   || |||| |||||||||||||||| |||||||  || ||||| | |||| |||| || ||||    
T  9831214 gagatgccaagccagctataaataaagtgccaaactaaccgaaaagtattacaatgtaaaaataagtgctatgatgattcaactgaatcacaacctgcca 9831115  T
Q  467 cacacatccttgagtcacgatcaagaacacca 498  Q
    |||  | |||||| ||| || |||||||||||    
T  9831114 cacgaaaccttgaatcatgaccaagaacacca 9831083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 30739504 - 30739584
Alignment:
Q  117 cctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    ||||||||||| || ||||| ||||||  ||||||||||||||| |||||||||||||  | | | |||||||||||||||    
T  30739504 cctatgcctaataaagtgaaaggactattccaccaaccatgataattaaagggaagagatgcatacttcaccttcaaccac 30739584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 48337081 - 48336994
Alignment:
Q  110 ctatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    |||| ||||||||||||| |  ||||| | ||||| |||||||| |||||  || |||||||||| |||||||||| |||||||||||    
T  48337081 ctattagcctatgcctaatatagtgaatgaactaaaccaccaactatgatgattgaagggaagagaaggaaatttcgccttcaaccac 48336994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 21204865 - 21204963
Alignment:
Q  99 aaaagaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    |||| |||||||||| |||||||| | || |  ||||| | ||||||||||||||||||||| || |||||||| | || ||||||| | |||||||||    
T  21204865 aaaacaaataactattagcctatgtccaaaattgtgaatgaactaagccaccaaccatgataattgaagggaagtgaagaaaatttcgcattcaaccac 21204963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 37773012 - 37772958
Alignment:
Q  131 ggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttc 185  Q
    |||||| |||||||||||||||||||| || || |||||||||| ||||||||||    
T  37773012 ggtgaaaggactaagccaccaaccatggtaattgaagggaagagaaggaaatttc 37772958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 18922026 - 18921946
Alignment:
Q  117 cctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    ||||||||||| || ||||| ||||||  | ||||||||||||| |||||||||||||  | | | |||||||||||||||    
T  18922026 cctatgcctaataaagtgaaaggactagtcaaccaaccatgataattaaagggaagagatgcatacttcaccttcaaccac 18921946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 202
Target Start/End: Complemental strand, 12115091 - 12115024
Alignment:
Q  135 aacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaa 202  Q
    |||||||| |||||| |||||||||| || ||||||||| ||   | |||||||||||||||||||||    
T  12115091 aacggactgagccacaaaccatgataattgaagggaagaataacgagtttcaccttcaaccacctaaa 12115024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 29521656 - 29521754
Alignment:
Q  99 aaaagaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    ||||||||||||||  || | ||||| ||||  ||||||||| ||| ||||||| ||||||| || || ||||||| || | ||||| |||||||||||    
T  29521656 aaaagaaataactactagtcaatgcccaacattgtgaacggattaaaccaccaatcatgataattgaaaggaagagaagcacatttcgccttcaaccac 29521754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 223
Target Start/End: Complemental strand, 43001807 - 43001717
Alignment:
Q  133 tgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatcctatc 223  Q
    |||||||||||||||||||   |||||| || ||  ||||||||| ||| ||| ||||||||||| ||||||  || ||||||||| ||||    
T  43001807 tgaacggactaagccaccacatatgataattgaaatgaagagtagtaaacttcgccttcaaccacataaatgttagtgacttaatcttatc 43001717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 37207398 - 37207459
Alignment:
Q  135 aacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaacca 196  Q
    |||||||| ||||| ||||||||||| ||||||||||||||   ||| |||||||| |||||    
T  37207398 aacggacttagccatcaaccatgataattaaagggaagagttataaacttcacctttaacca 37207459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 115 - 231
Target Start/End: Original strand, 32533047 - 32533163
Alignment:
Q  115 agcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagactt 214  Q
    ||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||| | ||||  |   ||||    
T  32533047 agcctatgcctcataaagtgaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgttaacaactt 32533146  T
Q  215 aatcctatcgaccacct 231  Q
    ||||||||| |||||||    
T  32533147 aatcctatccaccacct 32533163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 99 - 232
Target Start/End: Complemental strand, 2682894 - 2682761
Alignment:
Q  99 aaaagaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacc 198  Q
    ||||||||||||| | | |||||||  | || |||||| ||||||||||||||||||||| | || ||| ||| ||||||||||||||||||||||||||    
T  2682894 aaaagaaataacttttaacctatgctcagcatggtgaaaggactaagccaccaaccatgacaattgaagagaatagtaggaaatttcaccttcaaccacc 2682795  T
Q  199 taaatgcgagagacttaatcctatcgaccacctg 232  Q
    |||| || || ||||||||| | ||||| |||||    
T  2682794 taaaagcaagggacttaatcttgtcgacaacctg 2682761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 18672150 - 18672069
Alignment:
Q  115 agcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    ||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||| || | |||||||||||||||    
T  18672150 agcctatgcctagtaaggtgaacggactcagccaccaaccatgatagttaaagggaagagta-gatacttcaccttcaaccac 18672069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 104 - 228
Target Start/End: Complemental strand, 12688314 - 12688190
Alignment:
Q  104 aaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaat 203  Q
    ||||||| || |||||||||| ||||  | |||||||||||||||||| |||||  | |||||||||||||||| ||||||| |||||||||||  ||||    
T  12688314 aaataacaattagcctatgcccaacattgcgaacggactaagccaccagccatgtaaattaaagggaagagtagtaaatttctccttcaaccacacaaat 12688215  T
Q  204 gcgagagacttaatcctatcgacca 228  Q
    | ||| ||||||||| |||| ||||    
T  12688214 gtgagggacttaatcttatccacca 12688190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 97 - 233
Target Start/End: Complemental strand, 9907292 - 9907156
Alignment:
Q  97 aaaaaagaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaacca 196  Q
    |||| ||||||||| || ||||||||||||| | |||||| ||| ||||||||||  ||||||| || ||||||| || |||  ||||| ||||||||||    
T  9907292 aaaacagaaataacaattagcctatgcctaaaatggtgaatggattaagccaccacgcatgataattgaagggaatagaagggtatttctccttcaacca 9907193  T
Q  197 cctaaatgcgagagacttaatcctatcgaccacctga 233  Q
    | | || ||||| ||||||||  |||| |||||||||    
T  9907192 catgaaagcgagcgacttaattttatctaccacctga 9907156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 11298598 - 11298657
Alignment:
Q  138 ggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    ||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||    
T  11298598 ggactaagccaccaaccatgatagttaaagggaagagtgacaaacttcaccttcaaccac 11298657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 15117238 - 15117316
Alignment:
Q  119 tatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    ||||||||| || ||||| ||||||  ||||||||||||||| |||||||||||||||| | | |||||||||||||||    
T  15117238 tatgcctaataaagtgaaaggactactccaccaaccatgataattaaagggaagagtagcatacttcaccttcaaccac 15117316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 99 - 229
Target Start/End: Complemental strand, 34715047 - 34714917
Alignment:
Q  99 aaaagaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacc 198  Q
    ||||||||||||||| || ||||| | |  | ||| ||| ||||||||||||||||||| || || | |||||||| || ||||||  | ||||||||||    
T  34715047 aaaagaaataactattagtctatgtccagtatggtaaacagactaagccaccaaccatggtaattgatgggaagagaagtaaattttgctttcaaccacc 34714948  T
Q  199 taaatgcgagagacttaatcctatcgaccac 229  Q
    |||| | ||||||||||||| |||| |||||    
T  34714947 taaaagtgagagacttaatcttatcaaccac 34714917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 17292769 - 17292866
Alignment:
Q  135 aacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatcctatcgaccacctg 232  Q
    |||||||||||||| ||||||||||| || |||||||||| || ||||||  | ||||||||| | ||||| |||||||||||| ||  |||||||||    
T  17292769 aacggactaagccatcaaccatgataattgaagggaagagaagcaaatttggcgttcaaccacatgaatgctagagacttaatcttaatgaccacctg 17292866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 18015748 - 18015845
Alignment:
Q  135 aacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatcctatcgaccacctg 232  Q
    |||||| |||||||||||||||||||||||||||||||||| | ||| ||||||  ||||||| |||| |  |   ||||||||||||| ||||||||    
T  18015748 aacggagtaagccaccaaccatgatagttaaagggaagagttgtaaacttcacccccaaccacttaaacgttaacaacttaatcctatccaccacctg 18015845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 135 - 283
Target Start/End: Complemental strand, 11324563 - 11324415
Alignment:
Q  135 aacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatcctatcgaccacctgac 234  Q
    ||||||||||||||||| |||||||| || |||||||||| || ||||||| ||||||||||| |||| || ||  |||||||| | || |||| ||||     
T  11324563 aacggactaagccaccacccatgataattgaagggaagagaagcaaatttcgccttcaaccacgtaaaagcaagcaacttaatcttgtctaccatctgaa 11324464  T
Q  235 ttattaagcaaattttgtcgttaaaatgcctgttatttctttctttcca 283  Q
      |   |||||| |||||| || ||  |||||||||||||||| |||||    
T  11324463 gaaccgagcaaactttgtcattgaagagcctgttatttctttccttcca 11324415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 104 - 232
Target Start/End: Complemental strand, 27105398 - 27105270
Alignment:
Q  104 aaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaat 203  Q
    ||||||| || |||||||||| || |   |||||||| |||||||||| |||||  | |||||||||| ||||| ||| ||| |||||||||||  ||||    
T  27105398 aaataacaattagcctatgcccaatattttgaacggattaagccaccagccatgtaaattaaagggaatagtagtaaacttctccttcaaccacacaaat 27105299  T
Q  204 gcgagagacttaatcctatcgaccacctg 232  Q
    | ||| ||||||||| |||| ||||||||    
T  27105298 gtgagggacttaatcttatccaccacctg 27105270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 104 - 232
Target Start/End: Complemental strand, 27147207 - 27147079
Alignment:
Q  104 aaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaat 203  Q
    ||||||| || |||||||||| || |   |||||||| |||||||||| |||||  | |||||||||| ||||| ||| ||| |||||||||||  ||||    
T  27147207 aaataacaattagcctatgcccaatattttgaacggattaagccaccagccatgtaaattaaagggaatagtagtaaacttctccttcaaccacacaaat 27147108  T
Q  204 gcgagagacttaatcctatcgaccacctg 232  Q
    | ||| ||||||||| |||| ||||||||    
T  27147107 gtgagggacttaatcttatccaccacctg 27147079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 473
Target Start/End: Complemental strand, 2682588 - 2682485
Alignment:
Q  370 atgccaagccatctataaatgaaatgccaaacagccccaaaaatattacaatgtaaaaacaagtgctgggaagattcgattgaaccacacccagccacac 469  Q
    |||||||||||  ||||||| || |||||||||| |||||||| ||||||||||||||  || || ||||| |||||   | ||||||| ||||||||||    
T  2682588 atgccaagccacttataaattaagtgccaaacagacccaaaaacattacaatgtaaaactaaatgatgggatgattcttctaaaccacatccagccacac 2682489  T
Q  470 acat 473  Q
    ||||    
T  2682488 acat 2682485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 131 - 233
Target Start/End: Complemental strand, 22469522 - 22469420
Alignment:
Q  131 ggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatcctatcgaccacc 230  Q
    |||||| ||||||||||||||| ||||||| || |||||||||| |||  ||||  ||||||||||| | || ||||| ||||||||  |||| ||||||    
T  22469522 ggtgaatggactaagccaccaagcatgataattgaagggaagagaagggtatttatccttcaaccacatgaaagcgagcgacttaattttatctaccacc 22469423  T
Q  231 tga 233  Q
    |||    
T  22469422 tga 22469420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 115 - 233
Target Start/End: Original strand, 7824120 - 7824238
Alignment:
Q  115 agcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaa-atttcaccttcaaccacctaaatgcgagagact 213  Q
    |||||||||| || | ||||||||| ||||||||||| ||||| || || | |||||||| ||||| | ||| ||||||||||| |||| || || ||||    
T  7824120 agcctatgcccaaaatggtgaacgggctaagccaccacccatggtaattgaggggaagag-aggaatacttcgccttcaaccacgtaaaggcaagcgact 7824218  T
Q  214 taatcctatcgaccacctga 233  Q
    ||||| | ||||||||||||    
T  7824219 taatcttgtcgaccacctga 7824238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 29321330 - 29321389
Alignment:
Q  138 ggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    ||||||||||||||||||| ||||||||||||||||||   ||| ||||| |||||||||    
T  29321330 ggactaagccaccaaccatcatagttaaagggaagagtgacaaacttcactttcaaccac 29321389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 228
Target Start/End: Complemental strand, 7155552 - 7155422
Alignment:
Q  98 aaaaagaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    |||||||||||||| | |||||||||  |  | |||||||||||||| |||||| | |||||| || ||||| |||| || ||||||  |||||||||||    
T  7155552 aaaaagaaataactcttagcctatgctcagtacggtgaacggactaaaccaccatctatgataattgaagggtagagaagaaaatttttccttcaaccac 7155453  T
Q  198 ctaaatgcgagagacttaatcctatcgacca 228  Q
     |||| |  ||| |||||||| |||| ||||    
T  7155452 gtaaaagtaagaaacttaatcttatcaacca 7155422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 472
Target Start/End: Original strand, 32197102 - 32197192
Alignment:
Q  382 ctataaatgaaatgccaaacagccccaaaaatattacaatgtaaaaacaagtgctgggaagattcgattgaaccacacccagccacacaca 472  Q
    ||||||||||| ||||||||||  ||||||| ||||||||||||||| ||||| || || ||||| |  || ||||| |||| ||||||||    
T  32197102 ctataaatgaagtgccaaacagaaccaaaaaaattacaatgtaaaaataagtgttgagacgattccaacgatccacaaccagacacacaca 32197192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 197
Target Start/End: Original strand, 14215993 - 14216085
Alignment:
Q  105 aataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    ||||||||| ||||||| || |||| ||| || ||  |||||||||||| ||||||||  ||| |||||| ||||||||||  ||||||||||    
T  14215993 aataactattagcctattcccaacatggtaaaagggttaagccaccaactatgatagtcgaagagaagagaaggaaatttcttcttcaaccac 14216085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 10944206 - 10944161
Alignment:
Q  138 ggactaagccaccaaccatgatagttaaagggaagagtaggaaatt 183  Q
    |||||||||||| ||||||| || ||||||||||||| ||||||||    
T  10944206 ggactaagccacaaaccatggtaattaaagggaagagaaggaaatt 10944161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 232
Target Start/End: Complemental strand, 18673460 - 18673363
Alignment:
Q  135 aacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatcctatcgaccacctg 232  Q
    ||||| |||||||||||||||||||| || | ||||||| |   | ||||| ||||||||||| |||| |  |||||||||||  |||| ||||||||    
T  18673460 aacgggctaagccaccaaccatgataattgaggggaagactgacatatttctccttcaaccacataaaagtaagagacttaattttatccaccacctg 18673363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 5667348 - 5667408
Alignment:
Q  115 agcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagt 175  Q
    ||||||||||||| |  || |||||||||| ||||||||||||||| || |||| ||||||    
T  5667348 agcctatgcctaaaatagtaaacggactaatccaccaaccatgataattgaaggaaagagt 5667408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 428
Target Start/End: Original strand, 29599430 - 29599481
Alignment:
Q  376 agccatctataaatgaaatgccaaacagccccaaaaatattacaatgtaaaaa 428  Q
    ||||| ||||||||||| |||||||| | ||||||| ||||||||||||||||    
T  29599430 agccacctataaatgaa-tgccaaacggacccaaaactattacaatgtaaaaa 29599481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 31454171 - 31454211
Alignment:
Q  263 cctgttatttctttctttccaggtttcccaaactgtcgcaa 303  Q
    |||||||||||||||||||||  ||||||||||||| ||||    
T  31454171 cctgttatttctttctttccatatttcccaaactgtagcaa 31454211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 115 - 283
Target Start/End: Original strand, 27482654 - 27482822
Alignment:
Q  115 agcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagactt 214  Q
    |||||||||| |||| ||||||||||||||||||||| |||||||| || |||||||| |||    |||||||||||||||||| ||| ||||| |||||    
T  27482654 agcctatgcccaacatggtgaacggactaagccaccagccatgataattgaagggaagtgtaacgtatttcaccttcaaccaccaaaaggcgagggactt 27482753  T
Q  215 aatcctatcgaccacctgacttattaagcaaattttgtcgttaaaatgcctgttatttctttctttcca 283  Q
    |||| |||| ||||||||| |||   ||||   ||| || |||||   |||||||||||||||||||||    
T  27482754 aatcttatcaaccacctgaattaccgagcattctttatcattaaacaacctgttatttctttctttcca 27482822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 100 - 305
Target Start/End: Complemental strand, 25326254 - 25326049
Alignment:
Q  100 aaagaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacct 199  Q
    ||||||| | ||||||||| ||||| |||| |||||||| |||||||||||||| ||| || || |||| |||||||  |||||| ||||||||||||||    
T  25326254 aaagaaaaagctatcagccgatgccaaacatggtgaacgaactaagccaccaacgatggtaattgaaggcaagagtaacaaattttaccttcaaccacct 25326155  T
Q  200 aaatgcgagagacttaatcctatcgaccacctgacttattaagcaaattttgtcgttaaaatgcctgttatttctttctttccaggtttcccaaactgtc 299  Q
    ||| || |||| |||||| ||||| | |||| ||| |||  |||    ||| |||||| || || |||| ||||||||||| ||| ||||||||||| |     
T  25326154 aaaggctagagccttaatactatctaacaccggacctatcgagctttctttatcgttataaagcttgttgtttctttcttttcagatttcccaaactata 25326055  T
Q  300 gcaaac 305  Q
    ||||||    
T  25326054 gcaaac 25326049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 108 - 305
Target Start/End: Original strand, 12831489 - 12831686
Alignment:
Q  108 aactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcga 207  Q
    |||||| | |||||||| ||||  ||||||||||||||||||||||||||| | || |||||||| ||   ||||||||||||||||||| |||| | ||    
T  12831489 aactattaacctatgcccaacatagtgaacggactaagccaccaaccatgaaaattgaagggaagcgtgttaaatttcaccttcaaccacataaaagaga 12831588  T
Q  208 gagacttaatcctatcgaccacctgacttattaagcaaattttgtcgttaaaatgcctgttatttctttctttccaggtttcccaaactgtcgcaaac 305  Q
      ||||||||| |||| ||||||||   ||   ||||| |||| ||  |||| ||| |||| ||||||||||||||| | ||||| ||||| ||||||    
T  12831589 tcgacttaatcttatcaaccacctgtaataccgagcaagttttatccgtaaattgcatgttgtttctttctttccagatctcccagactgtagcaaac 12831686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 99 - 232
Target Start/End: Original strand, 19314970 - 19315103
Alignment:
Q  99 aaaagaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacc 198  Q
    |||| |||||||||| |||||||||||| || ||| ||||| |||||||||||||||||||| ||  ||||||    || ||||||| |||||||||||     
T  19314970 aaaataaataactattagcctatgcctagcatggtaaacgggctaagccaccaaccatgataattccagggaaataaagcaaatttcgccttcaaccaca 19315069  T
Q  199 taaatgcgagagacttaatcctatcgaccacctg 232  Q
    |||||| ||| ||||||||| |||| ||||||||    
T  19315070 taaatgtgagtgacttaatcttatcaaccacctg 19315103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 108 - 305
Target Start/End: Original strand, 12863464 - 12863661
Alignment:
Q  108 aactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcga 207  Q
    |||||| | |||||||| ||||  ||||||||||||||||||||||||||| | || |||||||| ||   ||||||||||||||||||| |||| | ||    
T  12863464 aactattaacctatgcccaacatagtgaacggactaagccaccaaccatgaaaattgaagggaagcgtgttaaatttcaccttcaaccacataaaagaga 12863563  T
Q  208 gagacttaatcctatcgaccacctgacttattaagcaaattttgtcgttaaaatgcctgttatttctttctttccaggtttcccaaactgtcgcaaac 305  Q
      ||||||||| |||| ||||||||   ||   ||||| |||| ||  |||| ||| |||| ||||||||||||||| | ||| | ||||| ||||||    
T  12863564 tggacttaatcttatcaaccacctgtaataccgagcaagttttatccgtaaattgcatgttgtttctttctttccagatctcctagactgtagcaaac 12863661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 117 - 232
Target Start/End: Original strand, 7961129 - 7961244
Alignment:
Q  117 cctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaa 216  Q
    ||||||||||  || ||||||| |||||||||||||||||||||||||||  ||||||||| | | ||| ||||||||||| | ||||  ||  ||||||    
T  7961129 cctatgcctagtaaagtgaacgaactaagccaccaaccatgatagttaaaatgaagagtagcatacttcgccttcaaccacttgaatgttagcaacttaa 7961228  T
Q  217 tcctatcgaccacctg 232  Q
    ||||||| ||||||||    
T  7961229 tcctatccaccacctg 7961244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 370 - 497
Target Start/End: Complemental strand, 25325950 - 25325823
Alignment:
Q  370 atgccaagccatctataaatgaaatgccaaacagccccaaaaatattacaatgtaaaaacaagtgctgggaagattcgattgaaccacacccagccacac 469  Q
    ||||| ||||| || |||||  |||| ||||| | ||||||||||||||||||||| || || || ||||| ||||| |  |||||||||||||||||||    
T  25325950 atgcccagccacctgtaaatataatgtcaaactgacccaaaaatattacaatgtaagaataaatgatgggaggattcaaccgaaccacacccagccacac 25325851  T
Q  470 acatccttgagtcacgatcaagaacacc 497  Q
    ||||||| || ||| |||||| ||||||    
T  25325850 acatcctagaatcatgatcaataacacc 25325823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 99 - 218
Target Start/End: Original strand, 26778687 - 26778805
Alignment:
Q  99 aaaagaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacc 198  Q
    |||||||||| |||| |||||||| | | || ||| |||||||||| ||||||||||||||| || |||| ||||| |  |||||||||||||||||||     
T  26778687 aaaagaaata-ctattagcctatgtcgagcatggtaaacggactaaaccaccaaccatgataattgaaggaaagagaaaaaaatttcaccttcaaccaca 26778785  T
Q  199 taaatgcgagagacttaatc 218  Q
    | ||||| ||||||||||||    
T  26778786 tgaatgctagagacttaatc 26778805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 365 - 498
Target Start/End: Original strand, 27482939 - 27483072
Alignment:
Q  365 ctgagatgccaagccatctataaatgaaatgccaaacagccccaaaaatattacaatgtaaaaacaagtgctgggaagattcgattgaaccacacccagc 464  Q
    ||||||||||||||||||||||||| ||||||||||| |  ||||||||| |||  ||||| || | |||||  || ||||| ||||||||||| || ||    
T  27482939 ctgagatgccaagccatctataaataaaatgccaaactgaaccaaaaatactactgtgtaagaataggtgcttagatgattcaattgaaccacaacctgc 27483038  T
Q  465 cacacacatccttgagtcacgatcaagaacacca 498  Q
     ||||| | |||||| || ||||||| |||||||    
T  27483039 gacacaaagccttgaatctcgatcaataacacca 27483072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 39840009 - 39839938
Alignment:
Q  126 aacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||  ||||| |||  ||||||||||    
T  39840009 aacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgtcttcaaccac 39839938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 202
Target Start/End: Complemental strand, 29994714 - 29994647
Alignment:
Q  135 aacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaa 202  Q
    |||||| ||||||||||||||||||| || |||||||||  |||||| ||||||||||||||| ||||    
T  29994714 aacggattaagccaccaaccatgataattgaagggaagaaaaggaaacttcaccttcaaccacttaaa 29994647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 132 - 217
Target Start/End: Original strand, 4396672 - 4396757
Alignment:
Q  132 gtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaat 217  Q
    ||||||||||||||| ||||  ||||  |||||||||||||||||| ||||||| || |||||||  |||||| ||| ||||||||    
T  4396672 gtgaacggactaagctaccagtcatgtaagttaaagggaagagtagtaaatttctccctcaaccatataaatgtgagggacttaat 4396757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 11305951 - 11305855
Alignment:
Q  100 aaagaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    ||||||||||| || |||||||||| ||||   |||| ||||||||||||||| |||| ||||| ||||| ||| |||||| |||| |||||||||||    
T  11305951 aaagaaataac-attagcctatgcccaacatattgaatggactaagccaccaaacatggtagttgaaggggagattaggaattttcgccttcaaccac 11305855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 7465337 - 7465257
Alignment:
Q  117 cctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    ||||||||||| || ||||| ||||||  ||||||||||||||| |||||||||||||  | | | |||||||||||||||    
T  7465337 cctatgcctaataaagtgaaaggactagaccaccaaccatgataattaaagggaagagatgcatacttcaccttcaaccac 7465257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 135 - 202
Target Start/End: Complemental strand, 32252215 - 32252148
Alignment:
Q  135 aacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaa 202  Q
    |||||||||||||||||||||||||| || || ||||||||||  | |||| | ||||||||||||||    
T  32252215 aacggactaagccaccaaccatgataattgaaaggaagagtagcgagtttcgcgttcaaccacctaaa 32252148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 16610691 - 16610601
Alignment:
Q  108 aactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacc 198  Q
    |||||| |||| |||||||| | ||| ||||||||||||||||| |||||||| || |||||||||| |  ||| |||  |||||||||||    
T  16610691 aactattagccaatgcctaaaatggtaaacggactaagccaccacccatgataattgaagggaagagaaacaaacttcgtcttcaaccacc 16610601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 21042045 - 21042005
Alignment:
Q  135 aacggactaagccaccaaccatgatagttaaagggaagagt 175  Q
    ||||||||||||||||| |||||||| ||||||||||||||    
T  21042045 aacggactaagccaccacccatgataattaaagggaagagt 21042005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 29651782 - 29651827
Alignment:
Q  115 agcctatgcctaacaaggtgaacggactaagccaccaaccatgata 160  Q
    |||||||||| |||| ||| ||||||||||||||||| ||||||||    
T  29651782 agcctatgcccaacatggtaaacggactaagccaccacccatgata 29651827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 232
Target Start/End: Original strand, 31706408 - 31706525
Alignment:
Q  115 agcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagactt 214  Q
    |||||||||| || | ||| ||||||||||||||||| ||||| || || | |||||||| |  | | ||| |||| |||||| |||| || || |||||    
T  31706408 agcctatgcccaatatggtaaacggactaagccaccacccatggtaattgaggggaagagaaatatacttcgcctttaaccacgtaaaagcaagcgactt 31706507  T
Q  215 aatcctatcgaccacctg 232  Q
    |||| | |||||||||||    
T  31706508 aatcttgtcgaccacctg 31706525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 32017992 - 32018049
Alignment:
Q  140 actaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    ||||||||||||||||||||| |||||||||||  ||| | | | |||||||||||||    
T  32017992 actaagccaccaaccatgataattaaagggaaggttagcatactgcaccttcaaccac 32018049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 18967946 - 18967882
Alignment:
Q  138 ggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaa 202  Q
    ||||||||||| || |||||||  ||||| ||||||| || ||||||| ||||||||||| ||||    
T  18967946 ggactaagccatcatccatgatcattaaatggaagagaagcaaatttcgccttcaaccacataaa 18967882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 102 - 231
Target Start/End: Original strand, 33692870 - 33692999
Alignment:
Q  102 agaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaa 201  Q
    ||||| |||||| | |||||||| | || ||||||||| |||||||||||||||||| |||| |||||||| ||   ||||||||||||||||||| |||    
T  33692870 agaaaaaactattaacctatgcccagcatggtgaacgggctaagccaccaaccatgaaagttgaagggaagcgtgttaaatttcaccttcaaccacataa 33692969  T
Q  202 atgcgagagacttaatcctatcgaccacct 231  Q
    | | ||  ||||||||| |||| |||||||    
T  33692970 aagagatggacttaatcttatcaaccacct 33692999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 29542393 - 29542452
Alignment:
Q  138 ggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    ||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||    
T  29542393 ggactaagccaccaaccatgatagttaaagggaagagtgacaaacttcaccttcaaccac 29542452  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 41878785 - 41878726
Alignment:
Q  138 ggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    ||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||    
T  41878785 ggactaagccaccaaccatgatagttaaagggaagagtgacaaacttcaccttcaaccac 41878726  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 19979287 - 19979343
Alignment:
Q  141 ctaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    |||||||||||||||||||||||||||||||||||   ||| |||||||||||||||    
T  19979287 ctaagccaccaaccatgatagttaaagggaagagttacaaacttcaccttcaaccac 19979343  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 25845741 - 25845646
Alignment:
Q  138 ggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatcctatcgaccacctga 233  Q
    |||||||||||||||||||| ||||| ||||| |||| |||||| ||| ||||||||||| | || | ||| ||||||||  |||| |||||||||    
T  25845741 ggactaagccaccaaccatggtagttcaagggcagagaaggaaacttcgccttcaaccacatgaaagagagcgacttaattttatcaaccacctga 25845646  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 198
Target Start/End: Complemental strand, 26285298 - 26285215
Alignment:
Q  115 agcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacc 198  Q
    ||||||||||||  |||||||||||| ||||||| ||||| ||||| || ||| |||| |||| ||||||||| ||||||||||    
T  26285298 agcctatgcctagtaaggtgaacggattaagccatcaaccttgataattgaagtgaagggtagcaaatttcacattcaaccacc 26285215  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 42806289 - 42806354
Alignment:
Q  132 gtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    ||||| |||||||||||||| |||||||||||||| ||||||||   ||| |||||||||||||||    
T  42806289 gtgaatggactaagccaccacccatgatagttaaaaggaagagtgacaaacttcaccttcaaccac 42806354  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 231
Target Start/End: Complemental strand, 4741115 - 4740999
Alignment:
Q  115 agcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagactt 214  Q
    ||||||||||||| | ||| |||||||||||||| || ||||| || || |||||||||| |  | | |||  |||||||||| |||| || || |||||    
T  4741115 agcctatgcctaaaatggtaaacggactaagccatcacccatggtaattgaagggaagagaaatatacttcgtcttcaaccacgtaaaagcaagcgactt 4741016  T
Q  215 aatcctatcgaccacct 231  Q
    |||| ||||||||||||    
T  4741015 aatcttatcgaccacct 4740999  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 20017407 - 20017523
Alignment:
Q  117 cctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaa 216  Q
    |||||||| || | ||||||||||| ||||||||| ||||| ||||| |||||||| | |  |||||||  |||||||||| || | || ||||||||||    
T  20017407 cctatgcccaaaatggtgaacggacaaagccaccagccatggtagtttaagggaagtgaaacaaatttcttcttcaaccacgtataagcaagagacttaa 20017506  T
Q  217 tcctatcgaccacctga 233  Q
    || | || |||||||||    
T  20017507 tcttttctaccacctga 20017523  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 228
Target Start/End: Complemental strand, 25408895 - 25408767
Alignment:
Q  100 aaagaaataactatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacct 199  Q
    ||||||||||| || ||||||| || |||| ||| || ||||||||||||||||||||||| || |||| ||  | ||  |||||| |||||||||||      
T  25408895 aaagaaataacaattagcctatacccaacatggtaaatggactaagccaccaaccatgataattgaaggaaattgaagtgaatttcgccttcaaccacac 25408796  T
Q  200 aaatgcgagagacttaatcctatcgacca 228  Q
     ||||  | |||||||||| |||||||||    
T  25408795 gaatgttatagacttaatcttatcgacca 25408767  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 37537238 - 37537298
Alignment:
Q  142 taagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaa 202  Q
    |||||||||||||||||||  |||||||||||| ||  || ||||||||||||||||||||    
T  37537238 taagccaccaaccatgataagtaaagggaagagaagcgaacttcaccttcaaccacctaaa 37537298  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 22534096 - 22534037
Alignment:
Q  138 ggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    |||||||||||||| |||||||||||||| ||||||||   ||| |||||||||||||||    
T  22534096 ggactaagccaccacccatgatagttaaaaggaagagtgacaaacttcaccttcaaccac 22534037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 135 - 202
Target Start/End: Complemental strand, 47161084 - 47161017
Alignment:
Q  135 aacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaa 202  Q
    ||||| ||||||||||||||||| || || || ||||||| |||||| ||||||||||||||| ||||    
T  47161084 aacggtctaagccaccaaccatggtaattgaatggaagagaaggaaacttcaccttcaaccacttaaa 47161017  T

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Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 6926047 - 6925985
Alignment:
Q  135 aacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    ||||||||||||||||| |||||||| ||||||||||||||   ||| |||||||| ||||||    
T  6926047 aacggactaagccaccacccatgataattaaagggaagagttacaaacttcacctttaaccac 6925985  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 53876864 - 53876946
Alignment:
Q  115 agcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    ||||||||||||  || || ||||||| ||||||||| |||||||| ||||||||||||||   ||| |||||||| ||||||    
T  53876864 agcctatgcctagtaaagtaaacggaccaagccaccacccatgataattaaagggaagagttacaaacttcacctttaaccac 53876946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 434
Target Start/End: Complemental strand, 4740813 - 4740761
Alignment:
Q  382 ctataaatgaaatgccaaacagccccaaaaatattacaatgtaaaaacaagtg 434  Q
    ||||||||||| ||||||||||  ||||||| ||||||||||||||| |||||    
T  4740813 ctataaatgaagtgccaaacagatccaaaaaaattacaatgtaaaaataagtg 4740761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 232
Target Start/End: Complemental strand, 6894307 - 6894192
Alignment:
Q  117 cctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaa 216  Q
    ||||||||||| |  || |||||||||| ||||||||||||||| || |||||||||||   |||  || ||||||||||  | || |  ||  ||||||    
T  6894307 cctatgcctaaaatagtaaacggactaatccaccaaccatgataattgaagggaagagttataaacctcgccttcaaccatttgaaagtcagtaacttaa 6894208  T
Q  217 tcctatcgaccacctg 232  Q
    ||||||||||||||||    
T  6894207 tcctatcgaccacctg 6894192  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 263 - 305
Target Start/End: Complemental strand, 31050640 - 31050598
Alignment:
Q  263 cctgttatttctttctttccaggtttcccaaactgtcgcaaac 305  Q
    |||||||||||||||||||||||||||||| || || ||||||    
T  31050640 cctgttatttctttctttccaggtttcccacacagtagcaaac 31050598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 3857614 - 3857683
Alignment:
Q  135 aacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatg 204  Q
    ||||| ||||||||||||||||| |||||| |||||||| ||  | ||||| | ||||||||| ||||||    
T  3857614 aacgggctaagccaccaaccatggtagttagagggaagactaacatatttccctttcaaccacataaatg 3857683  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 14788959 - 14788867
Alignment:
Q  139 gactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatcctatcgaccacct 231  Q
    |||||||||||||  |||| || ||  ||||||||| |  ||||||| ||||||||||| |||| || || ||||||||| |||| |||||||    
T  14788959 gactaagccaccactcatggtaattggagggaagagaaacaaatttcgccttcaaccacgtaaaagcaagggacttaatcttatctaccacct 14788867  T

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Target: scaffold0225 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 6601 - 6503
Alignment:
Q  135 aacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatcctatcgaccacctga 233  Q
    |||||||| |||||||||||||||||||||||||||||||| | ||| |||||||| |||||  | || |  ||  ||||||||||||| |||||||||    
T  6601 aacggacttagccaccaaccatgatagttaaagggaagagttgtaaacttcacctttaaccaattgaaagttagcaacttaatcctatctaccacctga 6503  T

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Target: scaffold0047 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 64272 - 64388
Alignment:
Q  117 cctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaa 216  Q
    |||||||| || | |||||| ||||||||||||||| ||||||| || |||| ||||| |||  ||||| |||||||||||   || ||||| |||||||    
T  64272 cctatgcccaaaatggtgaaaggactaagccaccaagcatgataattgaaggaaagagaagggtatttctccttcaaccacaagaaagcgagggacttaa 64371  T
Q  217 tcctatcgaccacctga 233  Q
    |  |||| |||||||||    
T  64372 ttttatctaccacctga 64388  T

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Target: scaffold0204 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 24603 - 24516
Alignment:
Q  110 ctatcagcctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 197  Q
    |||| ||||||||||||| |  ||||| | ||||| |||||||| |||||  || |||||||||| |||||||||| |||||||||||    
T  24603 ctattagcctatgcctaatatagtgaatgaactaaaccaccaactatgatgattgaagggaagagaaggaaatttcgccttcaaccac 24516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 291084 - 290999
Alignment:
Q  133 tgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatc 218  Q
    |||||||||||||||||||| |||| ||||| || |  ||| |||||| |||| ||||||||||| || | |  ||||||||||||    
T  291084 tgaacggactaagccaccaagcatggtagttgaaagagagattaggaattttcgccttcaaccacatataagtaagagacttaatc 290999  T

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Target: scaffold0795 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 2251 - 2187
Alignment:
Q  138 ggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaa 202  Q
    ||||| ||||||||||||||||| || ||||| |||| ||  |  ||||||||||||||||||||    
T  2251 ggactgagccaccaaccatgataattgaaggggagagaagcgagcttcaccttcaaccacctaaa 2187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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