View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9118_low_13 (Length: 412)
Name: NF9118_low_13
Description: NF9118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9118_low_13 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 83 - 394
Target Start/End: Original strand, 1984153 - 1984464
Alignment:
| Q |
83 |
ctttagaagaagataatagaattgatatatactttgcatataaattttgacggtgaagaaacggtgactacagtggtcgggttagaaggtacaggccaca |
182 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1984153 |
ctttagaagaaaataatagaattgatatatactttgcatataaattttgacggtgaagaaacggtgactacagtggtcgggttagaaggtacaggccaca |
1984252 |
T |
|
| Q |
183 |
tgtgccgattgtgtttccacttcttctcaccaccaaacccatacataatcctccatcatcttcttccctgaaaagaaacatcaattcccaaattcgaaac |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1984253 |
tgtgccgattgtgtttccacttcttctcaccaccaaacccatacataatcctccatcatcttcttccctgaaaagaaacatcaattcccaaattcgaaac |
1984352 |
T |
|
| Q |
283 |
cctagattccaaaatcaatttccaataaaaccctagatcaagctaagatctcatattacaacacaccatgattgaaaattcgaaagaaaatcgatcgaat |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1984353 |
cctagattccaaaatcaatttccaataaaaccctagatcaagctaagatctcatattacaacacaccatgattgaaaattcgaaagaaaatcgatcgaat |
1984452 |
T |
|
| Q |
383 |
tgaaatgaatta |
394 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1984453 |
tgaaatgaatta |
1984464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University