View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9118_low_15 (Length: 384)
Name: NF9118_low_15
Description: NF9118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9118_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 114 - 364
Target Start/End: Original strand, 41434583 - 41434834
Alignment:
| Q |
114 |
ttgcaagttgaaagctgctcacaaaattttaacgaaagtttagttatc-gactaattagaaaccactttcaataaccatgcaggggtcgatagaatttaa |
212 |
Q |
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| T |
41434583 |
ttgcaagttgaaagctgctcacaaaattttaacgaaagtttagttatctgactaattagaaaccactttcaataaccatgtaggggtcgatagaatttaa |
41434682 |
T |
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| Q |
213 |
aaatacaaatccatgcatacgcagttaatttcctttcatgtaggatttgtgccaaaagttaagaaaaatcgaaatgtataaaaacgttaggtagtgtatg |
312 |
Q |
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| T |
41434683 |
aaatacaaatccatgcatacgcagttaatttcctttcatgtaggatttgtgccaaaagttaagaaaaatcgaaatgtataaaaacgttaggtagggtatg |
41434782 |
T |
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| Q |
313 |
tttggatggtcttttgaacgagatacaattattttttaaggtatttagatat |
364 |
Q |
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| T |
41434783 |
tttggatgttcttttgaacgagatacaattattttttaaggtatttagatat |
41434834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 41434482 - 41434518
Alignment:
| Q |
13 |
agcacagatcacctatcgaatttaatagtccaatata |
49 |
Q |
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| T |
41434482 |
agcacagatcacctatcgaatttaatagtccaatata |
41434518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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