View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9118_low_17 (Length: 350)
Name: NF9118_low_17
Description: NF9118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9118_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 35970410 - 35970732
Alignment:
| Q |
18 |
ccaagcgcaaagatggtttcaattactcaacaaaccttgtttttatatagacttcaaccacaccttgtgtctcatatgggcgatgtgggattaaatatgc |
117 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35970410 |
ccaagcgcaaagatggtttcaactactcaacaaaccttgtttttatatagacttcaaccacaccttgtgtctcatatgggcgatgtgggattaaatatgc |
35970509 |
T |
|
| Q |
118 |
cttacttgaaaatttaagtgagcactcgccacacttttgccttcaacacatgtctattataccttattcaacaacctttagactgaacaaaaacagttta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35970510 |
cttacttgaaaatttaagtgagcactcgccacacttttgccttcaacacatgtccattataccttattcaacaacctttagactgaacaaaaacagttta |
35970609 |
T |
|
| Q |
218 |
acatcaagcttatcatgaatttacatgtaacgaaatggtagattgtaagagtctgatgataatgaaagaaaatatagaagaaaaaaccatgagcttcagt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35970610 |
acatcaagcttatcatgaatttacatgtaacgaaatggtagattgtaagagtctgatgataatgaaagaaaatatagaagaaaaaaccatgagcttcagt |
35970709 |
T |
|
| Q |
318 |
gctgcaacgctgtccattctctg |
340 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
35970710 |
gctgcaacgctgtccattctctg |
35970732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 146 - 335
Target Start/End: Original strand, 9212570 - 9212759
Alignment:
| Q |
146 |
ccacacttttgccttcaacacatgtctattataccttattcaacaacctttagactgaacaaaaacagtttaacatcaagcttatcatgaatttacatgt |
245 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9212570 |
ccacacttttgccttcaacacatatccattataccttattcaacaacctttagactgaacaaaaacagtttaacatcaagctaatcatgaatttacatgt |
9212669 |
T |
|
| Q |
246 |
aacgaaatggtagattgtaagagtctgatgataatgaaagaaaatatagaagaaaaaaccatgagcttcagtgctgcaacgctgtccatt |
335 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9212670 |
aacgaaaaggtagattgtaagagtcagatgataatgaaaggaaatatagaagaaaaaaccatgagcttcagtgctgcaacgctgtccatt |
9212759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 9365066 - 9364885
Alignment:
| Q |
18 |
ccaagcgcaaagatggtttcaattactcaacaaaccttgtttttatatagacttcaaccacaccttgtgtctcatatgggcgatgtgggattaaatatgc |
117 |
Q |
| |
|
|||||||||||||||||||| | | |||||| | |||||||||||||||||||| ||||||| || ||||||||||||||||||||| |||||| || |
|
|
| T |
9365066 |
ccaagcgcaaagatggtttctaatgctcaacttcacatgtttttatatagacttcaatcacacctggtttctcatatgggcgatgtgggactaaatacgc |
9364967 |
T |
|
| Q |
118 |
cttacttgaaaatttaagtgagcactcgccacacttttgccttcaacacatgtctattataccttattcaacaacctttaga |
199 |
Q |
| |
|
||||| |||||| ||| | | |||||||| | ||||||||||||| |||| ||||| | || ||||||| ||||||| |
|
|
| T |
9364966 |
aagacttggaaattttagtcaccgctcgccacgcctttgccttcaacaagtgtccattattcattcatcaacaatctttaga |
9364885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 9212474 - 9212563
Alignment:
| Q |
18 |
ccaagcgcaaagatggtttcaattactcaacaaaccttgtttttatatagacttcaaccacaccttgtgtctcatatgggcgatgtggga |
107 |
Q |
| |
|
|||||||||||||||||| | | || | |||| ||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||| |
|
|
| T |
9212474 |
ccaagcgcaaagatggttcctaatagtgaacagaccttgtttttatatagacttcaaccacaccttgtttctgatacaggcgatgtggga |
9212563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 9371417 - 9371322
Alignment:
| Q |
18 |
ccaagcgcaaagatggtttcaattactcaacaaaccttgtttttatatagacttcaaccacaccttgtgtctcatatgggcgatgtgggattaaata |
114 |
Q |
| |
|
|||||||||||||||||||| | | ||||| | |||||| ||||||| |||||||||||||||| ||||||| ||||||||||||| |||||| |
|
|
| T |
9371417 |
ccaagcgcaaagatggtttctactgttcaacttcacatgttttaatatagatttcaaccacaccttgtttctcata-gggcgatgtgggactaaata |
9371322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 24694532 - 24694436
Alignment:
| Q |
18 |
ccaagcgcaaagatggtttcaattactcaacaaaccttgtttttatatagacttcaaccacaccttgtgtctcatatgggcgatgtgggattaaata |
114 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24694532 |
ccaagcgcaaagatggtttcaattacgcaacaaaccttgtttttctgtagacttcaaccacgccttgtgtctcatatgggcgatgtgggatcaaata |
24694436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 6601080 - 6601152
Alignment:
| Q |
140 |
cactcgccacacttttgccttcaacacatgtctattataccttattcaacaacctttagactgaacaaaaaca |
212 |
Q |
| |
|
|||| ||||| ||||||||||||| ||| ||| ||||||||| ||||||||| |||| |||| |||||||||| |
|
|
| T |
6601080 |
cactagccacgcttttgccttcaatacaagtccattatacctcattcaacaatcttttgacttaacaaaaaca |
6601152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University