View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9118_low_18 (Length: 302)
Name: NF9118_low_18
Description: NF9118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9118_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 4 - 250
Target Start/End: Original strand, 2237518 - 2237764
Alignment:
| Q |
4 |
agagatttccagtggcaatatagacatgttttctataaacatcaatggaaggactacttccccaaatggcagctccagcatattcacctatctttccatt |
103 |
Q |
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| T |
2237518 |
agagatttccggtggcaatatagacatgttttcgataaacatcaatggaaggactacttccccaaatggcagctccagcatatgctcctatctttccgtt |
2237617 |
T |
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| Q |
104 |
attatctggtaacatataggttttccataagatggcaccagtttgagcatcaagttttgcaagacttccacgaaatatgcagcaatcttcaatggctaca |
203 |
Q |
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| T |
2237618 |
gttatccggtaacatataggttttccataagatgtcgccggtttgagcatcaagttttacaagacttccacgaaatatgcaacaatctttaatggttgca |
2237717 |
T |
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| Q |
204 |
ccttcttctagtgaagatgtcccaacgtagtaactcctatatgttga |
250 |
Q |
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| T |
2237718 |
ccttcttctagtgaagatgttccaacatagtaactcctatatattga |
2237764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 2260983 - 2260847
Alignment:
| Q |
8 |
atttccagtggcaatatagacatgttttctataaacatcaatggaaggactacttccccaaatggcagctccagcatattcacctatctttccattatta |
107 |
Q |
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||||||||||||||| || | ||| ||||| | ||||||| | |||||||||||||| || || | |||| |||||||||| | || ||||| ||| |
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| T |
2260983 |
atttccagtggcaatgtatatatggtttcttgatgcatcaattggtggactacttccccatatagctccaccagaatattcacctcttttgccattgtta |
2260884 |
T |
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| Q |
108 |
tctggtaacatataggttttccataagatggcaccag |
144 |
Q |
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| T |
2260883 |
tcaggtaacatatatgttttccataaaatggcaccag |
2260847 |
T |
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