View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9118_low_2 (Length: 774)
Name: NF9118_low_2
Description: NF9118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9118_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 644; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 22 - 760
Target Start/End: Complemental strand, 37633366 - 37632627
Alignment:
| Q |
22 |
cttctaaccaaaatacgctctcattttaattataatatgattcctcttagattaaataatgatcaagtgcgtatatttgaatcaatatatatttagataa |
121 |
Q |
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| T |
37633366 |
cttctaatcaaaatacgctctcattttaattataatatgattcctcttaaattaaataatgatcaaacgcgtatattcgaatcaatatatatttagataa |
37633267 |
T |
|
| Q |
122 |
tatatgactgcaaaacctaacaatttaaatgcaaataatagttctaaaaattctatggattatacaaatgaagaactacatttttagttgtggattattt |
221 |
Q |
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| T |
37633266 |
tatacgactgcaaaacctaacaatttaaatgcaaataatagttctaaaaattctaaggattatacaaatgaagaactacatttttagttgtggattattt |
37633167 |
T |
|
| Q |
222 |
aactagttcaaaaaatgccatgcgctgaaatgttaaacaaatgtactctaatttgtatgaaaatataggtacatacgaaaataacaaagatgcacaccgc |
321 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37633166 |
aactagttcaaaaaatgccaagcgctgaaatgttaaacaaatgtactctaatttgtatgaaaatataggtacatacgaaaatatcaaagatgcacaccgc |
37633067 |
T |
|
| Q |
322 |
atttcagtcctaaaggtgttttggtgcagccgcaagttttgatttgctgctatttctgctatgctgctaattttctggttttggtggtgtttttgtacag |
421 |
Q |
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| T |
37633066 |
atttcagtcctaaaggtgttttggtgcagccacaagttttgatttgctgctatttctgctatgctgttaattttctggttttggtggtgtttttgtacag |
37632967 |
T |
|
| Q |
422 |
cagtaagttatgtttgctactatttttgtttgtttgagtcctagggtgttcatggttgttttgaggttcatgtattcgtgggttagcaacatgtttttgg |
521 |
Q |
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| T |
37632966 |
caaaaagttatatttgctactatttttgtttgtttgagtcctagggtgttcatggttgttttgaggttcatgtattcgtgggttagcaacatgtttttgg |
37632867 |
T |
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| Q |
522 |
tctgtatggctactctctggcaggcaatttttgggttatctttgtatgccttgtcattggtgtatgactttgtatggtgtattgtc-ccccttcgagcac |
620 |
Q |
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| T |
37632866 |
tttgtatggctactctctggcaggcaattttggggttatctttgtatgccttgtcattggtgtatgactgtgtatggtgtattgtccccccttcgagcac |
37632767 |
T |
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| Q |
621 |
atatagtggaagccttttccaacccttcatagaaggtgggtagaggtatcttgttgtgatgcttgcggcagagtttttaatattttaattcatcgagaaa |
720 |
Q |
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| T |
37632766 |
atatagtgtaagccctttccaacccttcatagaaggtgggtagagttatcttgttatgatgcttgcggcagagtttttaatattttaattcatcgagaaa |
37632667 |
T |
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| Q |
721 |
aacaacaaaaatgaagaagtatgaattgcatgtagaataa |
760 |
Q |
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| T |
37632666 |
aacaacaaaaatgcagaagtatgaattgcatgtagaataa |
37632627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 434 - 610
Target Start/End: Complemental strand, 45220676 - 45220501
Alignment:
| Q |
434 |
tttgctactatttttgtttgtttgagtcctagggtgttcatggttgttttgaggttcatgtattcgtgggttagcaacatgtttttggtctgtatggcta |
533 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||| ||||||||| |||||||||| |||||||| |
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| T |
45220676 |
tttgctgctatttttgtttgtttgagtcctagggtgtccatggttgttttatggttcatgtattggtgagttagcaacctgtttttggtttgtatggcat |
45220577 |
T |
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| Q |
534 |
ctctctggcaggcaatttttgggttatctttgtatgccttgtcattggtgtatgactttgtatggtgtattgtcccc |
610 |
Q |
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||| ||| ||| |||||| | ||| | |||| |||| ||||||| ||||||||||| ||||||||||||||| |
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| T |
45220576 |
gtctttggtaggaaattttggtgttttatttgctcagcttgccattggt-tatgactttgtgtggtgtattgtcccc |
45220501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 452 - 622
Target Start/End: Complemental strand, 28697503 - 28697333
Alignment:
| Q |
452 |
tgtttgagtcctagggtgttcatggttgttttgaggttcatgtattcgtgggttagcaacatgtttttggtctgtatggctactctctggcaggcaattt |
551 |
Q |
| |
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||||||||||||| ||||| | |||||||||| |||||| |||||| ||| |||||||| |||||||||||||||| || |||| |||| || ||| | |
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| T |
28697503 |
tgtttgagtcctatggtgtccgtggttgttttaaggttcttgtattggtgaattagcaacctgtttttggtctgtatagcatctctttggcgggtaatat |
28697404 |
T |
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| Q |
552 |
ttgggttatctttgtatgccttgtcattggtgtatgactttgtatggtgtattgtcccccttcgagcacat |
622 |
Q |
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| T |
28697403 |
cggtgttatctttgtatgccttgccattggtgtatgtctttgtatgatctattgtacaccttcgaacacat |
28697333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 375 - 521
Target Start/End: Complemental strand, 18329884 - 18329737
Alignment:
| Q |
375 |
ttctgctatgctgctaattttctggttttggtggtgtttttgtacagcagtaagttatg-tttgctactatttttgtttgtttgagtcctagggtgttca |
473 |
Q |
| |
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||||||||||||||||||||| ||||||||| ||||| || |||||| ||||| | |||||| ||||||||||||||| ||||||| ||||| || |
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| T |
18329884 |
ttctgctatgctgctaattttacacttttggtggggttttggtgcagcagaaagttctaatttgctgctatttttgtttgttcaagtcctatggtgtcca |
18329785 |
T |
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| Q |
474 |
tggttgttttgaggttcatgtattcgtgggttagcaacatgtttttgg |
521 |
Q |
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|| | |||| ||||||||||||| ||| ||||||||| ||||||||| |
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| T |
18329784 |
tgttgcttttaaggttcatgtattggtgagttagcaacctgtttttgg |
18329737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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