View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9118_low_4 (Length: 726)
Name: NF9118_low_4
Description: NF9118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9118_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 672; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 672; E-Value: 0
Query Start/End: Original strand, 17 - 722
Target Start/End: Complemental strand, 37063538 - 37062836
Alignment:
| Q |
17 |
agtatggaggtgatgatattgagatcaaaccagtttgaaggtaacattccaccacaactgtgcaatttctcatcactgatacaattggatctttccgaca |
116 |
Q |
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| T |
37063538 |
agtatggaggtgatgatattgagatcaaaccagtttgaaggtaacattccaccacaactgtgcaatttctcatcactgatacaattggatctttcccaca |
37063439 |
T |
|
| Q |
117 |
ataaactttcagggtctattcccaaatgcataagtaacatcactggcatgggtggagcaaagaaaacgagtcattatccatttgagttcaaattgtatac |
216 |
Q |
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| T |
37063438 |
ataaactttcagggtctattcccaaatgcataagtaacatcactggcatgggtggagcaaagaaaacgagtcattatccatttgagttcaaattgtatac |
37063339 |
T |
|
| Q |
217 |
aaaagggcgagacctagagtattatgactatggactgttgagaactcttgacctttcagctaacaacttatcaggtgaaatcccctcacgagttttcaat |
316 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37063338 |
aaaagggcgagacttagagtattatgactatggactgttgagaactcttgacctttcagctaacaacttatcaggtgaaatcccctcacaagttttcaat |
37063239 |
T |
|
| Q |
317 |
ctagttcaactcaagtcattgaacttgtctcgaaatcatttcacaggaaagataccaagagacatcggagacatgaaaaacttggaatctcttgatctat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37063238 |
ctagttcaactcaagtcattgaacttgtctcgaaatcatttcacaggaaagataccaagagacatcggagacatgaaaaacttggaatctcttgatctat |
37063139 |
T |
|
| Q |
417 |
ccgacaataaacttgttggaggaattcctgttaccacatcaactttgtccttcttgagtttcttgaatctgtcaaacaattaccttgttgggcaaatccc |
516 |
Q |
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| T |
37063138 |
ccgacaataaacttgttggaggaattcctgttaccacatcaactttgtccttcttgagtttcttgaatctgtcaaacaattaccttgttgggcaaatccc |
37063039 |
T |
|
| Q |
517 |
agttgggactcaacttcaaagttttgatgcttcctgctatgttgggaatcctggactttgtggagctcctctaccaatatgtgatcatgggtcataccta |
616 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37063038 |
agttgggactcaacttcaaagttttgatgcttcctactatgttgggaatcctggactttgtggagctcctctaccaatatgtgatcatgggtcataccta |
37062939 |
T |
|
| Q |
617 |
catggaggaggacacaatgatattgataatgatgagaattcttttacacaatcactctactttgggttgggtgttggatttgcagtgggtttctggtgta |
716 |
Q |
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| T |
37062938 |
catgg---aggacacaatgatattgataatgatgagaattcttttacacaatcactctactttgggttgggtgttggatttgcagtgggtttctggtgta |
37062842 |
T |
|
| Q |
717 |
tctgtg |
722 |
Q |
| |
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| |||| |
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| T |
37062841 |
tttgtg |
37062836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 510 - 588
Target Start/End: Original strand, 17943183 - 17943261
Alignment:
| Q |
510 |
aaatcccagttgggactcaacttcaaagttttgatgcttcctgctatgttgggaatcctggactttgtggagctcctct |
588 |
Q |
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|||||||| |||| |||||||||||||||||| |||| || | || ||||||||||| ||| |||||||||||||| |
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| T |
17943183 |
aaatcccaattggaactcaacttcaaagttttaatgcatcgagttacattgggaatcctaaactatgtggagctcctct |
17943261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 524 - 588
Target Start/End: Complemental strand, 13665705 - 13665641
Alignment:
| Q |
524 |
actcaacttcaaagttttgatgcttcctgctatgttgggaatcctggactttgtggagctcctct |
588 |
Q |
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|||||||||||||||||| |||| || | ||| ||||||||||| |||||||||||||||||| |
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| T |
13665705 |
actcaacttcaaagttttaatgcatcaagttatattgggaatcctaaactttgtggagctcctct |
13665641 |
T |
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